Analysis of interatomic Contacts of Structural Units in PDB entry:
2PV2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PV2 entry

There are 6 chains in PDB entry 2PV2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 172ARG 274
B
 THR 172ARG 274
C
 THR 172ARG 274
D
 THR 172ARG 274
E
 ASN 1LYS 12
F
 ASN 1LYS 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2PV2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
188 208Right-handed alpha
Helix 2
2
A
211 220Right-handed alpha
Helix 3
3
A
224 228Right-handed 310
Helix 4
4
A
237 239Right-handed 310
Helix 5
5
A
240 249Right-handed alpha
Helix 6
6
B
188 208Right-handed alpha
Helix 7
7
B
211 220Right-handed alpha
Helix 8
8
B
224 228Right-handed 310
Helix 9
9
B
237 239Right-handed 310
Helix 10
10
B
240 247Right-handed alpha
Helix 11
11
C
188 208Right-handed alpha
Helix 12
12
C
211 220Right-handed alpha
Helix 13
13
C
224 228Right-handed 310
Helix 14
14
C
237 239Right-handed 310
Helix 15
15
C
240 248Right-handed alpha
Helix 16
16
D
188 208Right-handed alpha
Helix 17
17
D
211 220Right-handed alpha
Helix 18
18
D
224 228Right-handed 310
Helix 19
19
D
237 239Right-handed 310
Helix 20
20
D
240 247Right-handed alpha
Helix 21
21
E
2 11Right-handed alpha
Helix 22
22
F
2 11Right-handed alpha
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There are 4 sheets in PDB entry 2PV2. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 235first strand
Strand 2
A
173 182anti-parallel
Strand 3
A
264 274anti-parallel
Strand 4
A
255 261anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 235first strand
Strand 2
B
173 182anti-parallel
Strand 3
B
264 273anti-parallel
Strand 4
B
255 261anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
230 235first strand
Strand 2
C
173 182anti-parallel
Strand 3
C
264 273anti-parallel
Strand 4
C
255 261anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
230 235first strand
Strand 2
D
173 182anti-parallel
Strand 3
D
264 274anti-parallel
Strand 4
D
255 261anti-parallel
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