Analysis of interatomic Contacts of Structural Units in PDB entry:
2PV3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PV3 entry

There are 3 chains in PDB entry 2PV3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 25SER 427
B
 VAL 25SER 427
C
 ASN 1PHE 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2PV3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 55Right-handed alpha
Helix 2
2
A
62 87Right-handed alpha
Helix 3
3
A
92 107Right-handed alpha
Helix 4
4
A
110 119Right-handed alpha
Helix 5
5
A
128 148Right-handed alpha
Helix 6
6
A
153 167Right-handed alpha
Helix 7
7
A
188 207Right-handed alpha
Helix 8
8
A
211 218Right-handed alpha
Helix 9
9
A
240 248Right-handed alpha
Helix 10
10
A
392 420Right-handed alpha
Helix 11
11
B
39 57Right-handed alpha
Helix 12
12
B
62 87Right-handed alpha
Helix 13
13
B
92 106Right-handed alpha
Helix 14
14
B
110 122Right-handed alpha
Helix 15
15
B
124 150Right-handed alpha
Helix 16
16
B
153 165Right-handed alpha
Helix 17
17
B
166 168Right-handed 310
Helix 18
18
B
188 207Right-handed alpha
Helix 19
19
B
212 220Right-handed alpha
Helix 20
20
B
223 228Right-handed 310
Helix 21
21
B
240 245Right-handed alpha
Helix 22
22
B
392 418Right-handed alpha
Helix 23
23
C
2 8Right-handed alpha
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There are 5 sheets in PDB entry 2PV3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
423 425anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 234first strand
Strand 2
A
174 182anti-parallel
Strand 3
A
264 270anti-parallel
Strand 4
A
255 261anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
28 32anti-parallel
Strand 3
B
423 425anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 182first strand
Strand 2
B
264 272anti-parallel
Strand 3
B
173 176anti-parallel
Strand 4
B
232 235anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 182first strand
Strand 2
B
264 272anti-parallel
Strand 3
B
255 260anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il