Analysis of interatomic Contacts of Structural Units in PDB entry:
2PVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PVC entry

There are 6 chains in PDB entry 2PVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 34THR 380
D
 ALA 501ALA 507
A
 GLY 34THR 380
E
 ALA 501ALA 507
C
 GLY 34THR 380
F
 ALA 501ALA 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2PVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
34 44Right-handed alpha
Helix 2
2
B
48 52Right-handed 310
Helix 3
3
B
73 83Right-handed alpha
Helix 4
4
B
119 127Right-handed alpha
Helix 5
5
B
130 137Right-handed alpha
Helix 6
6
B
159 172Right-handed alpha
Helix 7
7
B
183 187Right-handed 310
Helix 8
8
B
200 206Right-handed alpha
Helix 9
9
B
228 235Right-handed alpha
Helix 10
10
B
255 271Right-handed alpha
Helix 11
11
B
291 303Right-handed alpha
Helix 12
12
B
339 347Right-handed alpha
Helix 13
13
B
361 366Right-handed alpha
Helix 14
14
B
367 374Right-handed 310
Helix 15
15
A
37 44Right-handed alpha
Helix 16
16
A
48 52Right-handed 310
Helix 17
17
A
73 82Right-handed alpha
Helix 18
18
A
118 126Right-handed alpha
Helix 19
19
A
129 137Right-handed alpha
Helix 20
20
A
159 172Right-handed alpha
Helix 21
21
A
183 187Right-handed 310
Helix 22
22
A
199 206Right-handed alpha
Helix 23
23
A
228 235Right-handed alpha
Helix 24
24
A
256 271Right-handed alpha
Helix 25
25
A
291 302Right-handed alpha
Helix 26
26
A
339 352Right-handed alpha
Helix 27
27
A
360 366Right-handed alpha
Helix 28
28
A
367 374Right-handed 310
Helix 29
29
C
37 44Right-handed alpha
Helix 30
30
C
48 52Right-handed 310
Helix 31
31
C
73 83Right-handed alpha
Helix 32
32
C
119 125Right-handed alpha
Helix 33
33
C
129 136Right-handed alpha
Helix 34
34
C
159 172Right-handed alpha
Helix 35
35
C
200 205Right-handed alpha
Helix 36
36
C
257 269Right-handed alpha
Helix 37
37
C
291 303Right-handed alpha
Helix 38
38
C
339 345Right-handed alpha
Helix 39
39
C
346 351Right-handed alpha
Helix 40
40
C
369 374Right-handed 310
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There are 12 sheets in PDB entry 2PVC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 107first strand
Strand 2
B
116 118anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
B
154 155anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 221first strand
Strand 2
B
192 195parallel
Strand 3
B
240 244parallel
Strand 4
B
281 286parallel
Strand 5
B
317 325anti-parallel
Strand 6
B
309 312anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
71 72anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
E
502 504anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
154 155anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 221first strand
Strand 2
A
192 195parallel
Strand 3
A
240 244parallel
Strand 4
A
281 286parallel
Strand 5
A
322 325anti-parallel
Strand 6
A
307 308anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 312first strand
Strand 2
A
317 319anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 64first strand
Strand 2
C
71 72anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 117first strand
Strand 2
C
105 107anti-parallel
Strand 3
F
503 504anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 151first strand
Strand 2
C
154 155anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 221first strand
Strand 2
C
192 195parallel
Strand 3
C
240 244parallel
Strand 4
C
281 286parallel
Strand 5
C
317 325anti-parallel
Strand 6
C
307 312anti-parallel
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