Analysis of interatomic Contacts of Structural Units in PDB entry:
2PVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PVP entry

There are 2 chains in PDB entry 2PVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0PRO 328
B
 HIS 0PRO 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 2PVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 29Right-handed alpha
Helix 2
2
A
48 52Right-handed 310
Helix 3
3
A
53 59Right-handed alpha
Helix 4
4
A
60 63Right-handed 310
Helix 5
5
A
103 112Right-handed alpha
Helix 6
6
A
120 129Right-handed alpha
Helix 7
7
A
129 140Right-handed alpha
Helix 8
8
A
154 156Right-handed 310
Helix 9
9
A
157 162Right-handed alpha
Helix 10
10
A
189 198Right-handed alpha
Helix 11
11
A
261 277Right-handed alpha
Helix 12
12
A
305 313Right-handed 310
Helix 13
13
A
315 327Right-handed alpha
Helix 14
14
B
13 29Right-handed alpha
Helix 15
15
B
48 52Right-handed 310
Helix 16
16
B
53 59Right-handed alpha
Helix 17
17
B
60 64Right-handed 310
Helix 18
18
B
97 102Right-handed alpha
Helix 19
19
B
103 112Right-handed alpha
Helix 20
20
B
120 129Right-handed alpha
Helix 21
21
B
129 140Right-handed alpha
Helix 22
22
B
154 160Right-handed alpha
Helix 23
23
B
186 188Right-handed 310
Helix 24
24
B
189 199Right-handed alpha
Helix 25
25
B
261 277Right-handed alpha
Helix 26
26
B
305 313Right-handed 310
Helix 27
27
B
315 327Right-handed alpha
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There are 8 sheets in PDB entry 2PVP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
3 8parallel
Strand 4
A
91 93parallel
Strand 5
A
116 117parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
74 79anti-parallel
Strand 3
A
82 87anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 150first strand
Strand 2
A
204 208anti-parallel
Strand 3
A
168 172anti-parallel
Strand 4
A
182 184anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
A
226 233anti-parallel
Strand 3
A
214 223anti-parallel
Strand 4
A
285 292anti-parallel
Strand 5
A
295 302anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 47first strand
Strand 2
B
32 38anti-parallel
Strand 3
B
3 8parallel
Strand 4
B
91 93parallel
Strand 5
B
116 117parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 71first strand
Strand 2
B
74 79anti-parallel
Strand 3
B
82 87anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 151first strand
Strand 2
B
203 208anti-parallel
Strand 3
B
168 172anti-parallel
Strand 4
B
182 184anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 229first strand
Strand 2
B
214 223anti-parallel
Strand 3
B
285 292anti-parallel
Strand 4
B
295 302anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il