Analysis of interatomic Contacts of Structural Units in PDB entry:
2PVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PVS entry

There are 2 chains in PDB entry 2PVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS -2CYS 450
B
 LYS -2CYS 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 2PVS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
29 34Right-handed alpha
Helix 3
3
A
56 61Right-handed alpha
Helix 4
4
A
84 97Right-handed alpha
Helix 5
5
A
106 111Right-handed alpha
Helix 6
6
A
113 140Right-handed alpha
Helix 7
7
A
152 165Right-handed alpha
Helix 8
8
A
186 190Right-handed 310
Helix 9
9
A
192 196Right-handed 310
Helix 10
10
A
256 259Right-handed 310
Helix 11
11
A
260 274Right-handed alpha
Helix 12
12
A
287 293Right-handed alpha
Helix 13
13
A
308 314Right-handed 310
Helix 14
14
B
3 7Right-handed 310
Helix 15
15
B
29 34Right-handed alpha
Helix 16
16
B
55 62Right-handed alpha
Helix 17
17
B
84 94Right-handed alpha
Helix 18
18
B
106 111Right-handed alpha
Helix 19
19
B
113 140Right-handed alpha
Helix 20
20
B
142 144Right-handed 310
Helix 21
21
B
152 165Right-handed alpha
Helix 22
22
B
186 190Right-handed 310
Helix 23
23
B
192 196Right-handed 310
Helix 24
24
B
256 259Right-handed 310
Helix 25
25
B
260 276Right-handed alpha
Helix 26
26
B
288 293Right-handed alpha
Helix 27
27
B
308 314Right-handed 310
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There are 8 sheets in PDB entry 2PVS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
99 105anti-parallel
Strand 4
A
69 74parallel
Strand 5
A
146 151parallel
Strand 6
A
171 175parallel
Strand 7
A
198 202parallel
Strand 8
A
224 228parallel
Strand 9
A
323 327parallel
Strand 10
A
283 284anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
216 217parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 377first strand
Strand 2
A
352 361anti-parallel
Strand 3
A
398 404anti-parallel
Strand 4
A
445 449anti-parallel
Strand 5
A
430 434anti-parallel
Strand 6
A
415 424anti-parallel
Strand 7
A
338 348anti-parallel
Strand 8
A
382 389anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 51first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
99 105anti-parallel
Strand 4
B
69 74parallel
Strand 5
B
146 151parallel
Strand 6
B
171 175parallel
Strand 7
B
198 202parallel
Strand 8
B
224 228parallel
Strand 9
B
323 327parallel
Strand 10
B
283 284anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 207first strand
Strand 2
B
216 217parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 373first strand
Strand 2
B
352 361anti-parallel
Strand 3
B
376 377anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 373first strand
Strand 2
B
352 361anti-parallel
Strand 3
B
398 405anti-parallel
Strand 4
B
445 449anti-parallel
Strand 5
B
430 434anti-parallel
Strand 6
B
419 424anti-parallel
Strand 7
B
338 343anti-parallel
Strand 8
B
384 389anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 347first strand
Strand 2
B
416 417anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il