Analysis of interatomic Contacts of Structural Units in PDB entry:
2PVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PVX entry

There are 8 chains in PDB entry 2PVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 53
B
 MET 101ASP 154
C
 MET 201ASP 254
D
 MET 301ASP 354
E
 MET 401ASP 454
F
 MET 501ASP 554
G
 MET 601ASP 654
H
 MET 701ASP 754
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2PVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 23Right-handed 310
Helix 2
2
A
29 33Right-handed 310
Helix 3
3
A
45 47Right-handed 310
Helix 4
4
B
119 123Right-handed 310
Helix 5
5
B
129 133Right-handed 310
Helix 6
6
B
145 147Right-handed 310
Helix 7
7
C
219 223Right-handed 310
Helix 8
8
C
229 233Right-handed 310
Helix 9
9
C
245 247Right-handed 310
Helix 10
10
D
319 323Right-handed 310
Helix 11
11
D
329 333Right-handed 310
Helix 12
12
D
345 347Right-handed 310
Helix 13
13
E
419 423Right-handed 310
Helix 14
14
E
429 433Right-handed 310
Helix 15
15
E
445 447Right-handed 310
Helix 16
16
F
519 523Right-handed 310
Helix 17
17
F
529 533Right-handed 310
Helix 18
18
F
545 547Right-handed 310
Helix 19
19
G
619 623Right-handed 310
Helix 20
20
G
629 633Right-handed 310
Helix 21
21
G
645 647Right-handed 310
Helix 22
22
H
719 723Right-handed 310
Helix 23
23
H
729 733Right-handed 310
Helix 24
24
H
745 747Right-handed 310
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There are 8 sheets in PDB entry 2PVX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
3 6anti-parallel
Strand 3
A
49 51anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
103 106anti-parallel
Strand 3
B
149 151anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 214first strand
Strand 2
C
203 206anti-parallel
Strand 3
C
249 251anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
312 314first strand
Strand 2
D
303 306anti-parallel
Strand 3
D
349 351anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
412 414first strand
Strand 2
E
403 406anti-parallel
Strand 3
E
449 453anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
512 514first strand
Strand 2
F
503 506anti-parallel
Strand 3
F
549 553anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
612 614first strand
Strand 2
G
603 606anti-parallel
Strand 3
G
649 653anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
712 714first strand
Strand 2
H
703 706anti-parallel
Strand 3
H
749 753anti-parallel
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