Analysis of interatomic Contacts of Structural Units in PDB entry:
2PWD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PWD entry

There are 2 chains in PDB entry 2PWD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1LYS 557
B
 LYS 1LYS 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 2PWD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed alpha
Helix 2
2
A
16 20Right-handed 310
Helix 3
3
A
30 37Right-handed alpha
Helix 4
4
A
37 45Right-handed alpha
Helix 5
5
A
74 77Right-handed 310
Helix 6
6
A
78 92Right-handed alpha
Helix 7
7
A
109 116Right-handed alpha
Helix 8
8
A
123 127Right-handed 310
Helix 9
9
A
175 191Right-handed alpha
Helix 10
10
A
201 205Right-handed 310
Helix 11
11
A
215 221Right-handed alpha
Helix 12
12
A
221 226Right-handed alpha
Helix 13
13
A
231 243Right-handed alpha
Helix 14
14
A
244 247Right-handed 310
Helix 15
15
A
259 261Right-handed 310
Helix 16
16
A
262 268Right-handed alpha
Helix 17
17
A
269 272Right-handed 310
Helix 18
18
A
298 313Right-handed alpha
Helix 19
19
A
330 335Right-handed alpha
Helix 20
20
A
342 355Right-handed alpha
Helix 21
21
A
366 370Right-handed 310
Helix 22
22
A
378 382Right-handed 310
Helix 23
23
A
384 395Right-handed alpha
Helix 24
24
A
401 413Right-handed alpha
Helix 25
25
A
414 418Right-handed 310
Helix 26
26
A
426 431Right-handed 310
Helix 27
27
A
441 446Right-handed 310
Helix 28
28
A
448 454Right-handed alpha
Helix 29
29
A
458 473Right-handed alpha
Helix 30
30
A
474 479Right-handed alpha
Helix 31
31
B
5 9Right-handed 310
Helix 32
32
B
16 20Right-handed 310
Helix 33
33
B
30 37Right-handed alpha
Helix 34
34
B
37 45Right-handed alpha
Helix 35
35
B
74 77Right-handed 310
Helix 36
36
B
78 92Right-handed alpha
Helix 37
37
B
109 118Right-handed alpha
Helix 38
38
B
123 127Right-handed 310
Helix 39
39
B
175 191Right-handed alpha
Helix 40
40
B
201 205Right-handed 310
Helix 41
41
B
215 221Right-handed alpha
Helix 42
42
B
221 226Right-handed alpha
Helix 43
43
B
231 243Right-handed alpha
Helix 44
44
B
244 247Right-handed 310
Helix 45
45
B
259 261Right-handed 310
Helix 46
46
B
262 268Right-handed alpha
Helix 47
47
B
269 272Right-handed 310
Helix 48
48
B
298 313Right-handed alpha
Helix 49
49
B
330 336Right-handed alpha
Helix 50
50
B
342 355Right-handed alpha
Helix 51
51
B
366 370Right-handed 310
Helix 52
52
B
378 382Right-handed 310
Helix 53
53
B
384 395Right-handed alpha
Helix 54
54
B
401 413Right-handed alpha
Helix 55
55
B
414 418Right-handed 310
Helix 56
56
B
426 431Right-handed 310
Helix 57
57
B
441 446Right-handed 310
Helix 58
58
B
448 454Right-handed alpha
Helix 59
59
B
458 473Right-handed alpha
Helix 60
60
B
474 479Right-handed alpha
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There are 10 sheets in PDB entry 2PWD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
250 254parallel
Strand 3
A
196 199parallel
Strand 4
A
95 100parallel
Strand 5
A
48 51parallel
Strand 6
A
12 15parallel
Strand 7
A
360 364parallel
Strand 8
A
320 321parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
68 72anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
159 161anti-parallel
Strand 3
A
150 152anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 483first strand
Strand 2
A
491 498anti-parallel
Strand 3
A
501 508anti-parallel
Strand 4
A
551 556anti-parallel
Strand 5
A
524 531anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 517first strand
Strand 2
A
543 546anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 278first strand
Strand 2
B
250 254parallel
Strand 3
B
196 199parallel
Strand 4
B
95 100parallel
Strand 5
B
48 51parallel
Strand 6
B
12 15parallel
Strand 7
B
360 364parallel
Strand 8
B
320 321parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
68 72anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 130first strand
Strand 2
B
159 161anti-parallel
Strand 3
B
150 152anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
480 483first strand
Strand 2
B
491 498anti-parallel
Strand 3
B
501 508anti-parallel
Strand 4
B
551 556anti-parallel
Strand 5
B
524 531anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
514 517first strand
Strand 2
B
543 546anti-parallel
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