Analysis of interatomic Contacts of Structural Units in PDB entry:
2PWJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PWJ entry

There are 6 chains in PDB entry 2PWJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10ILE 171
B
 LEU 10ILE 171
C
 ILE 9ILE 171
D
 ILE 9ILE 171
E
 ILE 9ILE 171
F
 LEU 10ILE 171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 2PWJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 42Right-handed alpha
Helix 2
2
A
63 70Right-handed alpha
Helix 3
3
A
70 77Right-handed alpha
Helix 4
4
A
89 100Right-handed alpha
Helix 5
5
A
114 121Right-handed alpha
Helix 6
6
A
163 171Right-handed alpha
Helix 7
7
B
37 42Right-handed alpha
Helix 8
8
B
63 70Right-handed alpha
Helix 9
9
B
70 77Right-handed alpha
Helix 10
10
B
89 100Right-handed alpha
Helix 11
11
B
114 120Right-handed alpha
Helix 12
12
B
163 171Right-handed alpha
Helix 13
13
C
37 42Right-handed alpha
Helix 14
14
C
63 70Right-handed alpha
Helix 15
15
C
70 77Right-handed alpha
Helix 16
16
C
89 100Right-handed alpha
Helix 17
17
C
114 121Right-handed alpha
Helix 18
18
C
163 171Right-handed alpha
Helix 19
19
D
37 42Right-handed alpha
Helix 20
20
D
63 70Right-handed alpha
Helix 21
21
D
70 77Right-handed alpha
Helix 22
22
D
89 100Right-handed alpha
Helix 23
23
D
114 121Right-handed alpha
Helix 24
24
D
127 130Right-handed 310
Helix 25
25
D
163 171Right-handed alpha
Helix 26
26
E
37 42Right-handed alpha
Helix 27
27
E
63 70Right-handed alpha
Helix 28
28
E
70 77Right-handed alpha
Helix 29
29
E
89 100Right-handed alpha
Helix 30
30
E
114 120Right-handed alpha
Helix 31
31
E
127 130Right-handed 310
Helix 32
32
E
163 171Right-handed alpha
Helix 33
33
F
37 42Right-handed alpha
Helix 34
34
F
63 70Right-handed alpha
Helix 35
35
F
70 77Right-handed alpha
Helix 36
36
F
89 100Right-handed alpha
Helix 37
37
F
114 119Right-handed alpha
Helix 38
38
F
163 171Right-handed alpha
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There are 18 sheets in PDB entry 2PWJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
35 36anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
81 86parallel
Strand 3
A
45 50parallel
Strand 4
A
138 143anti-parallel
Strand 5
A
146 152anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 125first strand
Strand 2
A
133 135anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
35 36anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 110first strand
Strand 2
B
81 86parallel
Strand 3
B
45 50parallel
Strand 4
B
138 143anti-parallel
Strand 5
B
146 152anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 125first strand
Strand 2
B
133 135anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 23first strand
Strand 2
C
35 36anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 110first strand
Strand 2
C
81 86parallel
Strand 3
C
45 50parallel
Strand 4
C
138 143anti-parallel
Strand 5
C
146 152anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 125first strand
Strand 2
C
133 135anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 23first strand
Strand 2
D
35 36anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 110first strand
Strand 2
D
81 86parallel
Strand 3
D
45 50parallel
Strand 4
D
138 143anti-parallel
Strand 5
D
146 152anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
123 125first strand
Strand 2
D
133 135anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
22 23first strand
Strand 2
E
35 36anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
107 110first strand
Strand 2
E
81 86parallel
Strand 3
E
45 50parallel
Strand 4
E
138 143anti-parallel
Strand 5
E
146 152anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
123 125first strand
Strand 2
E
133 135anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
22 23first strand
Strand 2
F
35 36anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
107 110first strand
Strand 2
F
81 86parallel
Strand 3
F
45 50parallel
Strand 4
F
138 143anti-parallel
Strand 5
F
146 152anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
123 125first strand
Strand 2
F
133 135anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il