Analysis of interatomic Contacts of Structural Units in PDB entry:
2PWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PWP entry

There are 3 chains in PDB entry 2PWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ILE 282
B
 LYS 2ILE 282
C
 LYS 2ILE 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 2PWP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 73Right-handed alpha
Helix 2
2
A
89 96Right-handed alpha
Helix 3
3
A
110 121Right-handed alpha
Helix 4
4
A
121 126Right-handed alpha
Helix 5
5
A
127 130Right-handed 310
Helix 6
6
A
139 147Right-handed alpha
Helix 7
7
A
163 169Right-handed 310
Helix 8
8
A
170 180Right-handed alpha
Helix 9
9
A
197 210Right-handed alpha
Helix 10
10
A
225 227Right-handed 310
Helix 11
11
A
261 268Right-handed alpha
Helix 12
12
A
272 279Right-handed alpha
Helix 13
13
B
59 73Right-handed alpha
Helix 14
14
B
89 96Right-handed alpha
Helix 15
15
B
110 121Right-handed alpha
Helix 16
16
B
121 126Right-handed alpha
Helix 17
17
B
127 130Right-handed 310
Helix 18
18
B
139 146Right-handed alpha
Helix 19
19
B
170 180Right-handed alpha
Helix 20
20
B
197 210Right-handed alpha
Helix 21
21
B
225 227Right-handed 310
Helix 22
22
B
251 255Right-handed 310
Helix 23
23
B
261 268Right-handed alpha
Helix 24
24
B
272 280Right-handed alpha
Helix 25
25
C
59 75Right-handed alpha
Helix 26
26
C
89 97Right-handed alpha
Helix 27
27
C
110 121Right-handed alpha
Helix 28
28
C
121 126Right-handed alpha
Helix 29
29
C
127 130Right-handed 310
Helix 30
30
C
139 144Right-handed alpha
Helix 31
31
C
165 169Right-handed 310
Helix 32
32
C
170 180Right-handed alpha
Helix 33
33
C
197 212Right-handed alpha
Helix 34
34
C
225 227Right-handed 310
Helix 35
35
C
251 255Right-handed 310
Helix 36
36
C
261 268Right-handed alpha
Helix 37
37
C
272 280Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2PWP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
17 29anti-parallel
Strand 3
A
34 40anti-parallel
Strand 4
A
45 49anti-parallel
Strand 5
A
52 56anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
103 107parallel
Strand 3
A
80 85parallel
Strand 4
A
151 157parallel
Strand 5
A
181 191parallel
Strand 6
A
229 236anti-parallel
Strand 7
A
214 221anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
15 29anti-parallel
Strand 3
C
15 29anti-parallel
Strand 4
C
4 7anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
45 49anti-parallel
Strand 3
B
34 40anti-parallel
Strand 4
B
15 29anti-parallel
Strand 5
C
15 29anti-parallel
Strand 6
C
34 40anti-parallel
Strand 7
C
45 49anti-parallel
Strand 8
C
52 56anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 136first strand
Strand 2
B
103 107parallel
Strand 3
B
80 84parallel
Strand 4
B
151 156parallel
Strand 5
B
181 191parallel
Strand 6
B
229 236anti-parallel
Strand 7
B
214 221anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 136first strand
Strand 2
C
103 107parallel
Strand 3
C
80 85parallel
Strand 4
C
151 157parallel
Strand 5
C
181 191parallel
Strand 6
C
229 236anti-parallel
Strand 7
C
214 221anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il