Analysis of interatomic Contacts of Structural Units in PDB entry:
2PZ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PZ8 entry

There are 2 chains in PDB entry 2PZ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 280
B
 MET 1HIS 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2PZ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 11Right-handed alpha
Helix 2
2
A
18 38Right-handed alpha
Helix 3
3
A
49 69Right-handed alpha
Helix 4
4
A
87 99Right-handed alpha
Helix 5
5
A
108 124Right-handed alpha
Helix 6
6
A
128 152Right-handed alpha
Helix 7
7
A
160 165Right-handed alpha
Helix 8
8
A
186 197Right-handed alpha
Helix 9
9
A
201 206Right-handed alpha
Helix 10
10
A
220 226Right-handed alpha
Helix 11
11
A
228 237Right-handed alpha
Helix 12
12
A
242 256Right-handed alpha
Helix 13
13
A
257 261Right-handed 310
Helix 14
14
A
269 274Right-handed alpha
Helix 15
15
B
2 11Right-handed alpha
Helix 16
16
B
18 38Right-handed alpha
Helix 17
17
B
49 69Right-handed alpha
Helix 18
18
B
87 99Right-handed alpha
Helix 19
19
B
108 124Right-handed alpha
Helix 20
20
B
128 152Right-handed alpha
Helix 21
21
B
160 165Right-handed alpha
Helix 22
22
B
186 197Right-handed alpha
Helix 23
23
B
201 206Right-handed alpha
Helix 24
24
B
220 226Right-handed alpha
Helix 25
25
B
228 237Right-handed alpha
Helix 26
26
B
242 256Right-handed alpha
Helix 27
27
B
257 261Right-handed 310
Helix 28
28
B
269 274Right-handed alpha
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There are 3 sheets in PDB entry 2PZ8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
74 79parallel
Strand 3
A
41 45parallel
Strand 4
A
154 155parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
B
264 265parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 105first strand
Strand 2
B
74 79parallel
Strand 3
B
41 45parallel
Strand 4
B
153 155parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il