Analysis of interatomic Contacts of Structural Units in PDB entry:
2PZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PZD entry

There are 2 chains in PDB entry 2PZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 359VAL 467
B
 ARG 359VAL 467
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 2PZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
370 381Right-handed alpha
Helix 2
2
A
400 406Right-handed alpha
Helix 3
3
A
423 434Right-handed alpha
Helix 4
4
B
370 381Right-handed alpha
Helix 5
5
B
400 406Right-handed alpha
Helix 6
6
B
423 434Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2PZD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
455 456anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
A
412 416anti-parallel
Strand 3
A
437 443anti-parallel
Strand 4
A
446 452anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
A
412 416anti-parallel
Strand 3
A
391 396anti-parallel
Strand 4
A
364 368anti-parallel
Strand 5
B
465 466anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 466first strand
Strand 2
B
364 368anti-parallel
Strand 3
B
391 396anti-parallel
Strand 4
B
412 416anti-parallel
Strand 5
B
419 420anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 466first strand
Strand 2
B
364 368anti-parallel
Strand 3
B
391 396anti-parallel
Strand 4
B
412 416anti-parallel
Strand 5
B
437 443anti-parallel
Strand 6
B
446 452anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 361first strand
Strand 2
B
455 456anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il