Analysis of interatomic Contacts of Structural Units in PDB entry:
2PZM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PZM entry

There are 2 chains in PDB entry 2PZM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -6LYS 309
B
 LEU -6SER 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2PZM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 21Right-handed alpha
Helix 2
2
A
22 24Right-handed 310
Helix 3
3
A
37 41Right-handed 310
Helix 4
4
A
56 68Right-handed alpha
Helix 5
5
A
84 93Right-handed alpha
Helix 6
6
A
93 107Right-handed alpha
Helix 7
7
A
118 121Right-handed 310
Helix 8
8
A
138 153Right-handed alpha
Helix 9
9
A
174 185Right-handed alpha
Helix 10
10
A
201 212Right-handed alpha
Helix 11
11
A
231 243Right-handed alpha
Helix 12
12
A
267 275Right-handed alpha
Helix 13
13
A
281 297Right-handed alpha
Helix 14
14
B
10 21Right-handed alpha
Helix 15
15
B
22 24Right-handed 310
Helix 16
16
B
37 41Right-handed 310
Helix 17
17
B
56 68Right-handed alpha
Helix 18
18
B
84 93Right-handed alpha
Helix 19
19
B
93 106Right-handed alpha
Helix 20
20
B
116 121Right-handed 310
Helix 21
21
B
138 153Right-handed alpha
Helix 22
22
B
174 185Right-handed alpha
Helix 23
23
B
201 212Right-handed alpha
Helix 24
24
B
231 243Right-handed alpha
Helix 25
25
B
267 275Right-handed alpha
Helix 26
26
B
281 297Right-handed alpha
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There are 8 sheets in PDB entry 2PZM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 51first strand
Strand 2
A
26 31parallel
Strand 3
A
2 6parallel
Strand 4
A
71 74parallel
Strand 5
A
110 116parallel
Strand 6
A
158 163parallel
Strand 7
A
219 223parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 167first strand
Strand 2
A
198 200parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
252 253parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
195 196anti-parallel
Strand 3
A
262 263parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 51first strand
Strand 2
B
26 31parallel
Strand 3
B
2 6parallel
Strand 4
B
71 74parallel
Strand 5
B
110 115parallel
Strand 6
B
158 163parallel
Strand 7
B
219 223parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 167first strand
Strand 2
B
198 200parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
252 253parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 230first strand
Strand 2
B
195 196anti-parallel
Strand 3
B
262 263parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il