Analysis of interatomic Contacts of Structural Units in PDB entry:
2PZY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PZY entry

There are 4 chains in PDB entry 2PZY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 42LYS 346
B
 PRO 44ASP 345
C
 GLN 42ALA 359
D
 PHE 43LEU 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 2PZY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 46Right-handed 310
Helix 2
2
A
58 62Right-handed alpha
Helix 3
3
A
98 112Right-handed alpha
Helix 4
4
A
147 151Right-handed 310
Helix 5
5
A
159 180Right-handed alpha
Helix 6
6
A
188 190Right-handed 310
Helix 7
7
A
242 258Right-handed alpha
Helix 8
8
A
274 282Right-handed alpha
Helix 9
9
A
295 303Right-handed alpha
Helix 10
10
A
315 322Right-handed alpha
Helix 11
11
A
322 327Right-handed alpha
Helix 12
12
A
337 345Right-handed alpha
Helix 13
13
B
58 61Right-handed 310
Helix 14
14
B
85 87Right-handed 310
Helix 15
15
B
98 112Right-handed alpha
Helix 16
16
B
145 152Right-handed alpha
Helix 17
17
B
159 179Right-handed alpha
Helix 18
18
B
241 243Right-handed 310
Helix 19
19
B
244 259Right-handed alpha
Helix 20
20
B
274 282Right-handed alpha
Helix 21
21
B
295 306Right-handed alpha
Helix 22
22
B
309 313Right-handed 310
Helix 23
23
B
315 321Right-handed alpha
Helix 24
24
B
322 327Right-handed alpha
Helix 25
25
B
328 331Right-handed 310
Helix 26
26
B
337 345Right-handed alpha
Helix 27
27
C
44 46Right-handed 310
Helix 28
28
C
58 62Right-handed 310
Helix 29
29
C
98 112Right-handed alpha
Helix 30
30
C
145 152Right-handed alpha
Helix 31
31
C
153 157Right-handed 310
Helix 32
32
C
159 180Right-handed alpha
Helix 33
33
C
188 190Right-handed 310
Helix 34
34
C
231 235Right-handed 310
Helix 35
35
C
241 257Right-handed alpha
Helix 36
36
C
274 281Right-handed alpha
Helix 37
37
C
295 306Right-handed alpha
Helix 38
38
C
309 313Right-handed 310
Helix 39
39
C
315 320Right-handed alpha
Helix 40
40
C
322 327Right-handed alpha
Helix 41
41
C
328 331Right-handed 310
Helix 42
42
C
337 344Right-handed alpha
Helix 43
43
C
347 355Right-handed alpha
Helix 44
44
D
44 48Right-handed 310
Helix 45
45
D
58 62Right-handed alpha
Helix 46
46
D
98 111Right-handed alpha
Helix 47
47
D
112 114Right-handed 310
Helix 48
48
D
145 150Right-handed alpha
Helix 49
49
D
159 180Right-handed alpha
Helix 50
50
D
188 190Right-handed 310
Helix 51
51
D
231 236Right-handed alpha
Helix 52
52
D
241 243Right-handed 310
Helix 53
53
D
244 255Right-handed alpha
Helix 54
54
D
274 281Right-handed alpha
Helix 55
55
D
289 294Right-handed 310
Helix 56
56
D
295 304Right-handed alpha
Helix 57
57
D
309 313Right-handed 310
Helix 58
58
D
315 322Right-handed alpha
Helix 59
59
D
322 327Right-handed alpha
Helix 60
60
D
328 331Right-handed 310
Helix 61
61
D
337 342Right-handed alpha
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There are 12 sheets in PDB entry 2PZY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
C
120 128anti-parallel
Strand 3
C
131 138anti-parallel
Strand 4
C
89 96anti-parallel
Strand 5
C
77 82anti-parallel
Strand 6
C
64 71anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 73first strand
Strand 2
A
76 83anti-parallel
Strand 3
A
89 94anti-parallel
Strand 4
A
131 138anti-parallel
Strand 5
A
120 128anti-parallel
Strand 6
B
48 50anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
192 194anti-parallel
Strand 3
A
203 205anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
212 213anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 73first strand
Strand 2
B
76 83anti-parallel
Strand 3
B
89 94anti-parallel
Strand 4
B
131 138anti-parallel
Strand 5
B
120 128anti-parallel
Strand 6
C
48 50anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
212 213anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
203 205anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
182 183first strand
Strand 2
C
212 213anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
192 194first strand
Strand 2
C
203 205anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
63 73first strand
Strand 2
D
76 83anti-parallel
Strand 3
D
89 96anti-parallel
Strand 4
D
133 138anti-parallel
Strand 5
D
120 124anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
182 183first strand
Strand 2
D
212 213anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
192 194first strand
Strand 2
D
203 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il