Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q01 entry

There are 3 chains in PDB entry 2Q01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3THR 481
B
 ARG 3LEU 482
C
 ARG 3LEU 482
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 2Q01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 29Right-handed alpha
Helix 2
2
A
44 50Right-handed alpha
Helix 3
3
A
55 60Right-handed alpha
Helix 4
4
A
64 73Right-handed alpha
Helix 5
5
A
93 104Right-handed alpha
Helix 6
6
A
105 109Right-handed 310
Helix 7
7
A
111 124Right-handed alpha
Helix 8
8
A
135 148Right-handed alpha
Helix 9
9
A
149 152Right-handed 310
Helix 10
10
A
153 161Right-handed alpha
Helix 11
11
A
176 185Right-handed alpha
Helix 12
12
A
207 220Right-handed alpha
Helix 13
13
A
225 243Right-handed alpha
Helix 14
14
A
261 275Right-handed alpha
Helix 15
15
A
278 301Right-handed alpha
Helix 16
16
A
315 322Right-handed alpha
Helix 17
17
A
340 348Right-handed alpha
Helix 18
18
A
363 368Right-handed alpha
Helix 19
19
A
368 374Right-handed alpha
Helix 20
20
A
385 389Right-handed 310
Helix 21
21
A
390 406Right-handed alpha
Helix 22
22
A
419 421Right-handed 310
Helix 23
23
A
422 444Right-handed alpha
Helix 24
24
A
448 461Right-handed alpha
Helix 25
25
A
461 468Right-handed alpha
Helix 26
26
B
16 29Right-handed alpha
Helix 27
27
B
44 50Right-handed alpha
Helix 28
28
B
55 61Right-handed alpha
Helix 29
29
B
64 73Right-handed alpha
Helix 30
30
B
93 104Right-handed alpha
Helix 31
31
B
105 109Right-handed 310
Helix 32
32
B
111 124Right-handed alpha
Helix 33
33
B
135 148Right-handed alpha
Helix 34
34
B
149 152Right-handed 310
Helix 35
35
B
153 161Right-handed alpha
Helix 36
36
B
176 185Right-handed alpha
Helix 37
37
B
197 201Right-handed 310
Helix 38
38
B
207 220Right-handed alpha
Helix 39
39
B
225 243Right-handed alpha
Helix 40
40
B
261 275Right-handed alpha
Helix 41
41
B
278 301Right-handed alpha
Helix 42
42
B
315 322Right-handed alpha
Helix 43
43
B
340 348Right-handed alpha
Helix 44
44
B
363 368Right-handed alpha
Helix 45
45
B
368 374Right-handed alpha
Helix 46
46
B
385 389Right-handed 310
Helix 47
47
B
390 406Right-handed alpha
Helix 48
48
B
419 421Right-handed 310
Helix 49
49
B
422 444Right-handed alpha
Helix 50
50
B
448 461Right-handed alpha
Helix 51
51
B
461 468Right-handed alpha
Helix 52
52
C
16 29Right-handed alpha
Helix 53
53
C
44 50Right-handed alpha
Helix 54
54
C
56 61Right-handed alpha
Helix 55
55
C
64 74Right-handed alpha
Helix 56
56
C
78 82Right-handed 310
Helix 57
57
C
93 104Right-handed alpha
Helix 58
58
C
105 109Right-handed 310
Helix 59
59
C
111 124Right-handed alpha
Helix 60
60
C
135 148Right-handed alpha
Helix 61
61
C
149 152Right-handed 310
Helix 62
62
C
153 161Right-handed alpha
Helix 63
63
C
176 185Right-handed alpha
Helix 64
64
C
196 201Right-handed 310
Helix 65
65
C
207 220Right-handed alpha
Helix 66
66
C
225 242Right-handed alpha
Helix 67
67
C
261 275Right-handed alpha
Helix 68
68
C
278 301Right-handed alpha
Helix 69
69
C
315 322Right-handed alpha
Helix 70
70
C
340 348Right-handed alpha
Helix 71
71
C
363 368Right-handed alpha
Helix 72
72
C
368 374Right-handed alpha
Helix 73
73
C
385 389Right-handed 310
Helix 74
74
C
390 406Right-handed alpha
Helix 75
75
C
419 421Right-handed 310
Helix 76
76
C
422 444Right-handed alpha
Helix 77
77
C
448 461Right-handed alpha
Helix 78
78
C
461 468Right-handed alpha
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There are 9 sheets in PDB entry 2Q01. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
163 167parallel
Strand 3
A
191 192parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 250first strand
Strand 2
A
303 306parallel
Strand 3
A
355 357parallel
Strand 4
A
379 381parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
330 331anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
163 167parallel
Strand 3
B
190 192parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 250first strand
Strand 2
B
303 306parallel
Strand 3
B
355 357parallel
Strand 4
B
379 381parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 311first strand
Strand 2
B
330 331anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 37first strand
Strand 2
C
163 167parallel
Strand 3
C
191 192parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
247 250first strand
Strand 2
C
303 306parallel
Strand 3
C
355 357parallel
Strand 4
C
379 381parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
310 311first strand
Strand 2
C
330 331anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il