Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2Q04 entry

There are 6 chains in PDB entry 2Q04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	ASP 210
B	PHE 2	MSE 208
C	PHE 2	TYR 209
D	GLY 0	TYR 209
E	GLY 0	TYR 209
F	GLN 5	MSE 208

There are 65 helices in PDB entry 2Q04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	25	30	Right-handed alpha
Helix 2	2	A	43	56	Right-handed alpha
Helix 3	3	A	84	88	Right-handed 310
Helix 4	4	A	104	107	Right-handed 310
Helix 5	5	A	110	121	Right-handed alpha
Helix 6	6	A	122	127	Right-handed 310
Helix 7	7	A	135	139	Right-handed 310
Helix 8	8	A	140	145	Right-handed alpha
Helix 9	9	A	147	162	Right-handed alpha
Helix 10	10	A	171	176	Right-handed alpha
Helix 11	11	A	191	203	Right-handed alpha
Helix 12	12	A	204	209	Right-handed 310
Helix 13	13	B	25	32	Right-handed alpha
Helix 14	14	B	43	56	Right-handed alpha
Helix 15	15	B	84	91	Right-handed 310
Helix 16	16	B	104	107	Right-handed 310
Helix 17	17	B	110	120	Right-handed alpha
Helix 18	18	B	121	127	Right-handed 310
Helix 19	19	B	135	139	Right-handed 310
Helix 20	20	B	141	145	Right-handed 310
Helix 21	21	B	147	162	Right-handed alpha
Helix 22	22	B	171	176	Right-handed alpha
Helix 23	23	B	191	203	Right-handed alpha
Helix 24	24	C	25	32	Right-handed alpha
Helix 25	25	C	43	57	Right-handed alpha
Helix 26	26	C	84	88	Right-handed 310
Helix 27	27	C	104	107	Right-handed 310
Helix 28	28	C	110	120	Right-handed alpha
Helix 29	29	C	121	127	Right-handed 310
Helix 30	30	C	135	139	Right-handed 310
Helix 31	31	C	140	145	Right-handed alpha
Helix 32	32	C	147	162	Right-handed alpha
Helix 33	33	C	171	176	Right-handed alpha
Helix 34	34	C	191	203	Right-handed alpha
Helix 35	35	D	25	30	Right-handed alpha
Helix 36	36	D	43	57	Right-handed alpha
Helix 37	37	D	84	88	Right-handed 310
Helix 38	38	D	104	107	Right-handed 310
Helix 39	39	D	110	120	Right-handed alpha
Helix 40	40	D	121	127	Right-handed 310
Helix 41	41	D	147	162	Right-handed alpha
Helix 42	42	D	171	176	Right-handed alpha
Helix 43	43	D	191	203	Right-handed alpha
Helix 44	44	D	204	208	Right-handed 310
Helix 45	45	E	25	30	Right-handed alpha
Helix 46	46	E	43	57	Right-handed alpha
Helix 47	47	E	84	88	Right-handed 310
Helix 48	48	E	104	107	Right-handed 310
Helix 49	49	E	110	121	Right-handed alpha
Helix 50	50	E	122	127	Right-handed 310
Helix 51	51	E	135	139	Right-handed 310
Helix 52	52	E	140	145	Right-handed alpha
Helix 53	53	E	147	162	Right-handed alpha
Helix 54	54	E	171	176	Right-handed alpha
Helix 55	55	E	191	203	Right-handed alpha
Helix 56	56	E	205	209	Right-handed 310
Helix 57	57	F	25	32	Right-handed alpha
Helix 58	58	F	43	56	Right-handed alpha
Helix 59	59	F	84	88	Right-handed 310
Helix 60	60	F	111	120	Right-handed alpha
Helix 61	61	F	121	127	Right-handed 310
Helix 62	62	F	135	139	Right-handed 310
Helix 63	63	F	147	162	Right-handed alpha
Helix 64	64	F	171	176	Right-handed alpha
Helix 65	65	F	191	203	Right-handed alpha

There are 12 sheets in PDB entry 2Q04. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	11	first strand
Strand 2	A	18	22	anti-parallel
Strand 3	A	61	67	anti-parallel
Strand 4	A	70	78	anti-parallel
Strand 5	A	33	34	parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	11	first strand
Strand 2	A	18	22	anti-parallel
Strand 3	A	61	67	anti-parallel
Strand 4	A	70	78	anti-parallel
Strand 5	A	94	102	anti-parallel
Strand 6	A	129	134	parallel
Strand 7	A	181	186	anti-parallel
Strand 8	A	165	167	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	18	22	anti-parallel
Strand 3	B	61	67	anti-parallel
Strand 4	B	70	78	anti-parallel
Strand 5	B	33	34	parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	18	22	anti-parallel
Strand 3	B	61	67	anti-parallel
Strand 4	B	70	78	anti-parallel
Strand 5	B	94	102	anti-parallel
Strand 6	B	129	134	parallel
Strand 7	B	181	186	anti-parallel
Strand 8	B	165	167	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	11	first strand
Strand 2	C	18	22	anti-parallel
Strand 3	C	61	67	anti-parallel
Strand 4	C	70	78	anti-parallel
Strand 5	C	33	34	parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	11	first strand
Strand 2	C	18	22	anti-parallel
Strand 3	C	61	67	anti-parallel
Strand 4	C	70	78	anti-parallel
Strand 5	C	94	102	anti-parallel
Strand 6	C	129	134	parallel
Strand 7	C	181	186	anti-parallel
Strand 8	C	165	167	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	11	first strand
Strand 2	D	18	22	anti-parallel
Strand 3	D	61	67	anti-parallel
Strand 4	D	70	78	anti-parallel
Strand 5	D	33	34	parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	11	first strand
Strand 2	D	18	22	anti-parallel
Strand 3	D	61	67	anti-parallel
Strand 4	D	70	78	anti-parallel
Strand 5	D	94	102	anti-parallel
Strand 6	D	129	134	parallel
Strand 7	D	181	186	anti-parallel
Strand 8	D	165	167	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	11	first strand
Strand 2	E	18	22	anti-parallel
Strand 3	E	61	67	anti-parallel
Strand 4	E	70	78	anti-parallel
Strand 5	E	33	34	parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	11	first strand
Strand 2	E	18	22	anti-parallel
Strand 3	E	61	67	anti-parallel
Strand 4	E	70	78	anti-parallel
Strand 5	E	94	102	anti-parallel
Strand 6	E	129	134	parallel
Strand 7	E	181	186	anti-parallel
Strand 8	E	165	167	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	11	first strand
Strand 2	F	18	22	anti-parallel
Strand 3	F	61	67	anti-parallel
Strand 4	F	70	78	anti-parallel
Strand 5	F	33	34	parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	11	first strand
Strand 2	F	18	22	anti-parallel
Strand 3	F	61	67	anti-parallel
Strand 4	F	70	78	anti-parallel
Strand 5	F	94	102	anti-parallel
Strand 6	F	129	134	parallel
Strand 7	F	181	186	anti-parallel
Strand 8	F	165	167	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2Q04

Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q04