Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q07 entry

There is 1 chain in PDB entry 2Q07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 244SER 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2Q07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
244 254Right-handed alpha
Helix 2
2
A
271 274Right-handed 310
Helix 3
3
A
275 285Right-handed alpha
Helix 4
4
A
303 305Right-handed 310
Helix 5
5
A
322 341Right-handed alpha
Helix 6
6
A
351 362Right-handed alpha
Helix 7
7
A
378 390Right-handed alpha
Helix 8
8
A
396 411Right-handed alpha
Helix 9
9
A
447 457Right-handed alpha
Helix 10
10
A
507 512Right-handed alpha
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There are 3 sheets in PDB entry 2Q07. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 301first strand
Strand 2
A
290 294anti-parallel
Strand 3
A
260 265parallel
Strand 4
A
344 347parallel
Strand 5
A
367 370parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 419first strand
Strand 2
A
426 429anti-parallel
Strand 3
A
432 438anti-parallel
Strand 4
A
443 446anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 474first strand
Strand 2
A
518 526anti-parallel
Strand 3
A
499 504anti-parallel
Strand 4
A
490 494anti-parallel
Strand 5
A
461 464parallel
Strand 6
A
478 481anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il