Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q0X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q0X entry

There are 2 chains in PDB entry 2Q0X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8THR 301
B
 ARG 9THR 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 2Q0X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 65Right-handed alpha
Helix 2
2
A
75 79Right-handed 310
Helix 3
3
A
86 105Right-handed alpha
Helix 4
4
A
118 129Right-handed alpha
Helix 5
5
A
131 133Right-handed 310
Helix 6
6
A
153 171Right-handed alpha
Helix 7
7
A
175 180Right-handed 310
Helix 8
8
A
188 194Right-handed alpha
Helix 9
9
A
199 204Right-handed alpha
Helix 10
10
A
204 210Right-handed alpha
Helix 11
11
A
212 219Right-handed alpha
Helix 12
12
A
220 223Right-handed 310
Helix 13
13
A
240 255Right-handed alpha
Helix 14
14
A
279 300Right-handed alpha
Helix 15
15
B
55 65Right-handed alpha
Helix 16
16
B
75 79Right-handed 310
Helix 17
17
B
86 105Right-handed alpha
Helix 18
18
B
117 129Right-handed alpha
Helix 19
19
B
153 170Right-handed alpha
Helix 20
20
B
175 180Right-handed 310
Helix 21
21
B
188 194Right-handed alpha
Helix 22
22
B
199 204Right-handed alpha
Helix 23
23
B
204 210Right-handed alpha
Helix 24
24
B
212 219Right-handed alpha
Helix 25
25
B
220 223Right-handed 310
Helix 26
26
B
240 255Right-handed alpha
Helix 27
27
B
279 300Right-handed alpha
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There are 3 sheets in PDB entry 2Q0X. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 16 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 264first strand
Strand 2
A
227 232parallel
Strand 3
A
135 143parallel
Strand 4
A
110 115parallel
Strand 5
A
40 44parallel
Strand 6
A
69 73parallel
Strand 7
A
26 33anti-parallel
Strand 8
A
13 23anti-parallel
Strand 9
B
13 21anti-parallel
Strand 10
B
27 33anti-parallel
Strand 11
B
69 73anti-parallel
Strand 12
B
40 44parallel
Strand 13
B
110 115parallel
Strand 14
B
135 143parallel
Strand 15
B
227 232parallel
Strand 16
B
260 264parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
275 277anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 269first strand
Strand 2
B
275 277anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il