Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q10 entry

There are 6 chains in PDB entry 2Q10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A -4 C 6
D
 C -4 T 6
E
 A -4 C 6
F
 C -4 T 6
A
 MET 1LEU 238
B
 MET 1LEU 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2Q10. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 19Right-handed alpha
Helix 2
2
A
34 44Right-handed alpha
Helix 3
3
A
85 94Right-handed alpha
Helix 4
4
A
150 154Right-handed 310
Helix 5
5
A
188 194Right-handed alpha
Helix 6
6
A
223 225Right-handed 310
Helix 7
7
A
226 230Right-handed alpha
Helix 8
8
B
5 18Right-handed alpha
Helix 9
9
B
25 29Right-handed 310
Helix 10
10
B
34 44Right-handed alpha
Helix 11
11
B
85 94Right-handed alpha
Helix 12
12
B
150 154Right-handed 310
Helix 13
13
B
187 194Right-handed alpha
Helix 14
14
B
223 225Right-handed 310
Helix 15
15
B
226 230Right-handed alpha
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There are 10 sheets in PDB entry 2Q10. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
173 185anti-parallel
Strand 3
A
156 164anti-parallel
Strand 4
A
60 65parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
173 185anti-parallel
Strand 3
A
231 236anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
A
219 222anti-parallel
Strand 3
A
198 206anti-parallel
Strand 4
A
106 114anti-parallel
Strand 5
A
95 98anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
A
219 222anti-parallel
Strand 3
A
198 206anti-parallel
Strand 4
A
213 215anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
141 146anti-parallel
Strand 3
A
133 138anti-parallel
Strand 4
A
124 130anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
173 185anti-parallel
Strand 3
B
156 164anti-parallel
Strand 4
B
60 65parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
173 185anti-parallel
Strand 3
B
231 236anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 77first strand
Strand 2
B
219 222anti-parallel
Strand 3
B
198 206anti-parallel
Strand 4
B
106 114anti-parallel
Strand 5
B
95 98anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 77first strand
Strand 2
B
219 222anti-parallel
Strand 3
B
198 206anti-parallel
Strand 4
B
214 215anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
141 146anti-parallel
Strand 3
B
133 138anti-parallel
Strand 4
B
124 130anti-parallel
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