Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q16


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q16 entry

There are 2 chains in PDB entry 2Q16 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLY 197
B
 LYS 3ARG 195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2Q16. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 25Right-handed alpha
Helix 2
2
A
32 35Right-handed 310
Helix 3
3
A
45 62Right-handed alpha
Helix 4
4
A
76 78Right-handed 310
Helix 5
5
A
81 85Right-handed 310
Helix 6
6
A
94 106Right-handed alpha
Helix 7
7
A
110 113Right-handed 310
Helix 8
8
A
156 158Right-handed 310
Helix 9
9
A
168 172Right-handed 310
Helix 10
10
A
173 181Right-handed alpha
Helix 11
11
A
181 196Right-handed alpha
Helix 12
12
B
10 25Right-handed alpha
Helix 13
13
B
32 35Right-handed 310
Helix 14
14
B
45 62Right-handed alpha
Helix 15
15
B
76 78Right-handed 310
Helix 16
16
B
81 85Right-handed 310
Helix 17
17
B
94 106Right-handed alpha
Helix 18
18
B
110 113Right-handed 310
Helix 19
19
B
156 158Right-handed 310
Helix 20
20
B
168 172Right-handed 310
Helix 21
21
B
173 181Right-handed alpha
Helix 22
22
B
181 195Right-handed alpha
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There are 2 sheets in PDB entry 2Q16. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
3 6parallel
Strand 3
A
65 74parallel
Strand 4
A
115 125anti-parallel
Strand 5
A
134 144anti-parallel
Strand 6
A
160 161anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
4 6parallel
Strand 3
B
65 74parallel
Strand 4
B
115 125anti-parallel
Strand 5
B
134 144anti-parallel
Strand 6
B
160 161anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il