Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q29 entry

There are 2 chains in PDB entry 2Q29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5SER 550
B
 LEU 5SER 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 58 helices in PDB entry 2Q29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 21Right-handed alpha
Helix 2
2
A
34 44Right-handed alpha
Helix 3
3
A
53 69Right-handed alpha
Helix 4
4
A
78 96Right-handed alpha
Helix 5
5
A
107 113Right-handed alpha
Helix 6
6
A
122 128Right-handed alpha
Helix 7
7
A
129 131Right-handed 310
Helix 8
8
A
139 141Right-handed 310
Helix 9
9
A
142 156Right-handed alpha
Helix 10
10
A
168 173Right-handed alpha
Helix 11
11
A
177 183Right-handed alpha
Helix 12
12
A
197 211Right-handed alpha
Helix 13
13
A
219 226Right-handed alpha
Helix 14
14
A
227 239Right-handed alpha
Helix 15
15
A
246 249Right-handed 310
Helix 16
16
A
260 262Right-handed 310
Helix 17
17
A
263 271Right-handed alpha
Helix 18
18
A
282 289Right-handed 310
Helix 19
19
A
304 308Right-handed 310
Helix 20
20
A
321 336Right-handed alpha
Helix 21
21
A
341 365Right-handed alpha
Helix 22
22
A
371 385Right-handed alpha
Helix 23
23
A
396 406Right-handed alpha
Helix 24
24
A
425 438Right-handed alpha
Helix 25
25
A
447 452Right-handed alpha
Helix 26
26
A
453 455Right-handed 310
Helix 27
27
A
456 463Right-handed alpha
Helix 28
28
A
501 510Right-handed 310
Helix 29
29
A
518 533Right-handed alpha
Helix 30
30
B
10 21Right-handed alpha
Helix 31
31
B
34 44Right-handed alpha
Helix 32
32
B
53 69Right-handed alpha
Helix 33
33
B
78 96Right-handed alpha
Helix 34
34
B
107 113Right-handed alpha
Helix 35
35
B
122 128Right-handed alpha
Helix 36
36
B
129 131Right-handed 310
Helix 37
37
B
139 141Right-handed 310
Helix 38
38
B
142 156Right-handed alpha
Helix 39
39
B
168 173Right-handed alpha
Helix 40
40
B
177 182Right-handed alpha
Helix 41
41
B
197 211Right-handed alpha
Helix 42
42
B
219 226Right-handed alpha
Helix 43
43
B
227 239Right-handed alpha
Helix 44
44
B
246 249Right-handed 310
Helix 45
45
B
260 262Right-handed 310
Helix 46
46
B
263 271Right-handed alpha
Helix 47
47
B
282 289Right-handed 310
Helix 48
48
B
304 308Right-handed 310
Helix 49
49
B
321 336Right-handed alpha
Helix 50
50
B
341 365Right-handed alpha
Helix 51
51
B
371 385Right-handed alpha
Helix 52
52
B
396 406Right-handed alpha
Helix 53
53
B
425 438Right-handed alpha
Helix 54
54
B
447 452Right-handed alpha
Helix 55
55
B
453 455Right-handed 310
Helix 56
56
B
456 463Right-handed alpha
Helix 57
57
B
501 510Right-handed 310
Helix 58
58
B
518 533Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 2Q29. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
174 176anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
25 28parallel
Strand 3
A
72 76parallel
Strand 4
A
99 105parallel
Strand 5
A
161 167parallel
Strand 6
A
133 136parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
B
194 196anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 244first strand
Strand 2
A
214 218parallel
Strand 3
A
273 277parallel
Strand 4
A
297 302parallel
Strand 5
A
316 319parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 416first strand
Strand 2
A
390 394parallel
Strand 3
A
441 446parallel
Strand 4
A
467 473parallel
Strand 5
A
536 541parallel
Strand 6
A
512 516parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
174 176anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
25 28parallel
Strand 3
B
72 76parallel
Strand 4
B
99 105parallel
Strand 5
B
161 167parallel
Strand 6
B
133 136parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 244first strand
Strand 2
B
214 218parallel
Strand 3
B
273 277parallel
Strand 4
B
297 302parallel
Strand 5
B
316 319parallel
Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 416first strand
Strand 2
B
390 394parallel
Strand 3
B
441 446parallel
Strand 4
B
467 473parallel
Strand 5
B
536 541parallel
Strand 6
B
512 516parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il