Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q2V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q2V entry

There are 4 chains in PDB entry 2Q2V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLN 256
B
 THR 2GLN 256
C
 THR 2GLN 256
D
 THR 2GLN 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 2Q2V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 28Right-handed alpha
Helix 2
2
A
40 49Right-handed alpha
Helix 3
3
A
63 79Right-handed alpha
Helix 4
4
A
95 99Right-handed 310
Helix 5
5
A
100 112Right-handed alpha
Helix 6
6
A
112 129Right-handed alpha
Helix 7
7
A
139 143Right-handed 310
Helix 8
8
A
149 170Right-handed alpha
Helix 9
9
A
187 200Right-handed alpha
Helix 10
10
A
203 213Right-handed alpha
Helix 11
11
A
223 235Right-handed alpha
Helix 12
12
A
236 240Right-handed 310
Helix 13
13
A
252 256Right-handed 310
Helix 14
14
B
15 28Right-handed alpha
Helix 15
15
B
40 49Right-handed alpha
Helix 16
16
B
63 79Right-handed alpha
Helix 17
17
B
95 99Right-handed 310
Helix 18
18
B
100 112Right-handed alpha
Helix 19
19
B
112 129Right-handed alpha
Helix 20
20
B
139 143Right-handed 310
Helix 21
21
B
149 170Right-handed alpha
Helix 22
22
B
187 199Right-handed alpha
Helix 23
23
B
203 214Right-handed alpha
Helix 24
24
B
223 235Right-handed alpha
Helix 25
25
B
236 240Right-handed 310
Helix 26
26
B
252 256Right-handed 310
Helix 27
27
C
15 28Right-handed alpha
Helix 28
28
C
40 49Right-handed alpha
Helix 29
29
C
63 79Right-handed alpha
Helix 30
30
C
95 99Right-handed 310
Helix 31
31
C
100 112Right-handed alpha
Helix 32
32
C
112 130Right-handed alpha
Helix 33
33
C
139 143Right-handed 310
Helix 34
34
C
149 170Right-handed alpha
Helix 35
35
C
187 196Right-handed alpha
Helix 36
36
C
205 216Right-handed alpha
Helix 37
37
C
223 236Right-handed alpha
Helix 38
38
C
237 240Right-handed 310
Helix 39
39
C
252 256Right-handed 310
Helix 40
40
D
15 28Right-handed alpha
Helix 41
41
D
39 45Right-handed alpha
Helix 42
42
D
47 51Right-handed 310
Helix 43
43
D
63 79Right-handed alpha
Helix 44
44
D
95 99Right-handed 310
Helix 45
45
D
100 112Right-handed alpha
Helix 46
46
D
112 129Right-handed alpha
Helix 47
47
D
139 143Right-handed 310
Helix 48
48
D
149 170Right-handed alpha
Helix 49
49
D
187 197Right-handed alpha
Helix 50
50
D
206 216Right-handed alpha
Helix 51
51
D
223 236Right-handed alpha
Helix 52
52
D
237 240Right-handed 310
Helix 53
53
D
252 256Right-handed 310
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There are 4 sheets in PDB entry 2Q2V. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
31 35parallel
Strand 3
A
7 10parallel
Strand 4
A
83 86parallel
Strand 5
A
132 137parallel
Strand 6
A
175 182parallel
Strand 7
A
246 249parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 57first strand
Strand 2
B
31 35parallel
Strand 3
B
7 10parallel
Strand 4
B
83 86parallel
Strand 5
B
132 137parallel
Strand 6
B
175 182parallel
Strand 7
B
246 249parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 57first strand
Strand 2
C
31 35parallel
Strand 3
C
7 10parallel
Strand 4
C
83 86parallel
Strand 5
C
132 137parallel
Strand 6
C
175 182parallel
Strand 7
C
246 249parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 57first strand
Strand 2
D
31 35parallel
Strand 3
D
7 10parallel
Strand 4
D
83 86parallel
Strand 5
D
132 137parallel
Strand 6
D
175 182parallel
Strand 7
D
246 249parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il