Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q43


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q43 entry

There is 1 chain in PDB entry 2Q43 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 16SER 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2Q43. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 23Right-handed alpha
Helix 2
2
A
23 40Right-handed alpha
Helix 3
3
A
47 62Right-handed alpha
Helix 4
4
A
117 135Right-handed alpha
Helix 5
5
A
136 139Right-handed 310
Helix 6
6
A
155 163Right-handed alpha
Helix 7
7
A
218 235Right-handed alpha
Helix 8
8
A
276 294Right-handed alpha
Helix 9
9
A
304 308Right-handed 310
Helix 10
10
A
317 332Right-handed alpha
Helix 11
11
A
349 354Right-handed alpha
Helix 12
12
A
383 385Right-handed 310
Helix 13
13
A
386 406Right-handed alpha
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There are 3 sheets in PDB entry 2Q43. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 69first strand
Strand 2
A
73 79anti-parallel
Strand 3
A
142 148anti-parallel
Strand 4
A
85 91parallel
Strand 5
A
169 182parallel
Strand 6
A
358 366parallel
Strand 7
A
186 188anti-parallel
Strand 8
A
338 339parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 194first strand
Strand 2
A
314 316anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 253first strand
Strand 2
A
264 273anti-parallel
Strand 3
A
198 206anti-parallel
Strand 4
A
297 302anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il