Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q47 entry

There are 2 chains in PDB entry 2Q47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 52SER 202
B
 HIS 52SER 202
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2Q47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
73 75Right-handed 310
Helix 2
2
A
76 81Right-handed alpha
Helix 3
3
A
97 106Right-handed alpha
Helix 4
4
A
127 139Right-handed alpha
Helix 5
5
A
140 144Right-handed 310
Helix 6
6
A
155 168Right-handed alpha
Helix 7
7
A
171 184Right-handed alpha
Helix 8
8
A
189 197Right-handed alpha
Helix 9
9
B
76 84Right-handed alpha
Helix 10
10
B
97 107Right-handed alpha
Helix 11
11
B
120 124Right-handed 310
Helix 12
12
B
127 140Right-handed alpha
Helix 13
13
B
155 168Right-handed alpha
Helix 14
14
B
171 184Right-handed alpha
Helix 15
15
B
185 187Right-handed 310
Helix 16
16
B
188 198Right-handed alpha
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There are 3 sheets in PDB entry 2Q47. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
66 69anti-parallel
Strand 3
A
146 149parallel
Strand 4
A
87 90parallel
Strand 5
A
110 112parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
66 68anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
110 113parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il