Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q4W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q4W entry

There is 1 chain in PDB entry 2Q4W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 34LEU 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2Q4W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 50Right-handed alpha
Helix 2
2
A
70 84Right-handed alpha
Helix 3
3
A
113 118Right-handed 310
Helix 4
4
A
141 154Right-handed alpha
Helix 5
5
A
167 173Right-handed alpha
Helix 6
6
A
180 185Right-handed alpha
Helix 7
7
A
186 189Right-handed 310
Helix 8
8
A
211 219Right-handed alpha
Helix 9
9
A
251 264Right-handed alpha
Helix 10
10
A
288 292Right-handed 310
Helix 11
11
A
301 305Right-handed 310
Helix 12
12
A
327 340Right-handed alpha
Helix 13
13
A
356 361Right-handed alpha
Helix 14
14
A
362 374Right-handed alpha
Helix 15
15
A
389 399Right-handed alpha
Helix 16
16
A
420 422Right-handed 310
Helix 17
17
A
451 472Right-handed alpha
Helix 18
18
A
485 494Right-handed alpha
Helix 19
19
A
496 508Right-handed alpha
Helix 20
20
A
514 518Right-handed 310
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There are 6 sheets in PDB entry 2Q4W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
108 111parallel
Strand 3
A
89 92parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
132 137anti-parallel
Strand 3
A
226 237anti-parallel
Strand 4
A
155 156anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
132 137anti-parallel
Strand 3
A
226 237anti-parallel
Strand 4
A
191 198anti-parallel
Strand 5
A
203 206anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 276first strand
Strand 2
A
312 322anti-parallel
Strand 3
A
279 280anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 276first strand
Strand 2
A
312 322anti-parallel
Strand 3
A
241 249anti-parallel
Strand 4
A
349 355anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 418first strand
Strand 2
A
436 442anti-parallel
Strand 3
A
383 388anti-parallel
Strand 4
A
476 478anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il