Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q5J entry

There are 2 chains in PDB entry 2Q5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 538
B
 MET 1ARG 538
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 2Q5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 14Right-handed alpha
Helix 2
2
A
26 38Right-handed alpha
Helix 3
3
A
47 62Right-handed alpha
Helix 4
4
A
73 78Right-handed alpha
Helix 5
5
A
79 89Right-handed alpha
Helix 6
6
A
120 126Right-handed alpha
Helix 7
7
A
127 129Right-handed 310
Helix 8
8
A
140 156Right-handed alpha
Helix 9
9
A
166 168Right-handed 310
Helix 10
10
A
184 201Right-handed alpha
Helix 11
11
A
210 216Right-handed alpha
Helix 12
12
A
218 229Right-handed alpha
Helix 13
13
A
260 270Right-handed alpha
Helix 14
14
A
293 295Right-handed 310
Helix 15
15
A
316 327Right-handed alpha
Helix 16
16
A
355 369Right-handed alpha
Helix 17
17
A
381 388Right-handed alpha
Helix 18
18
A
406 418Right-handed alpha
Helix 19
19
A
429 433Right-handed alpha
Helix 20
20
A
435 440Right-handed 310
Helix 21
21
A
441 446Right-handed alpha
Helix 22
22
A
459 464Right-handed alpha
Helix 23
23
A
478 484Right-handed alpha
Helix 24
24
A
485 487Right-handed 310
Helix 25
25
A
495 509Right-handed alpha
Helix 26
26
A
526 538Right-handed alpha
Helix 27
27
B
2 14Right-handed alpha
Helix 28
28
B
24 26Right-handed 310
Helix 29
29
B
27 38Right-handed alpha
Helix 30
30
B
47 63Right-handed alpha
Helix 31
31
B
73 78Right-handed alpha
Helix 32
32
B
79 89Right-handed alpha
Helix 33
33
B
120 127Right-handed alpha
Helix 34
34
B
140 156Right-handed alpha
Helix 35
35
B
166 168Right-handed 310
Helix 36
36
B
184 201Right-handed alpha
Helix 37
37
B
210 216Right-handed alpha
Helix 38
38
B
218 230Right-handed alpha
Helix 39
39
B
260 269Right-handed alpha
Helix 40
40
B
288 292Right-handed 310
Helix 41
41
B
293 297Right-handed 310
Helix 42
42
B
316 326Right-handed alpha
Helix 43
43
B
355 369Right-handed alpha
Helix 44
44
B
381 388Right-handed alpha
Helix 45
45
B
406 416Right-handed alpha
Helix 46
46
B
429 436Right-handed alpha
Helix 47
47
B
437 440Right-handed 310
Helix 48
48
B
441 446Right-handed alpha
Helix 49
49
B
459 466Right-handed alpha
Helix 50
50
B
478 483Right-handed alpha
Helix 51
51
B
495 509Right-handed alpha
Helix 52
52
B
526 538Right-handed alpha
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There are 7 sheets in PDB entry 2Q5J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
19 21parallel
Strand 3
A
66 70parallel
Strand 4
A
93 99parallel
Strand 5
A
159 164parallel
Strand 6
A
132 134parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
205 209parallel
Strand 3
A
272 276parallel
Strand 4
A
297 301parallel
Strand 5
A
304 306anti-parallel
Strand 6
A
311 313anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 396first strand
Strand 2
A
375 378parallel
Strand 3
A
423 428parallel
Strand 4
A
450 455parallel
Strand 5
A
514 519parallel
Strand 6
A
489 493parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
66 70parallel
Strand 3
B
93 99parallel
Strand 4
B
159 164parallel
Strand 5
B
131 134parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 235first strand
Strand 2
B
207 209parallel
Strand 3
B
274 276parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 300first strand
Strand 2
B
304 307anti-parallel
Strand 3
B
310 313anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 396first strand
Strand 2
B
375 378parallel
Strand 3
B
423 428parallel
Strand 4
B
450 455parallel
Strand 5
B
513 519parallel
Strand 6
B
488 493parallel
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