Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q6E entry

There are 3 chains in PDB entry 2Q6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 413
B
 SER 2GLY 413
C
 SER 2GLY 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 2Q6E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 20Right-handed alpha
Helix 2
2
A
31 38Right-handed 310
Helix 3
3
A
41 47Right-handed alpha
Helix 4
4
A
48 56Right-handed alpha
Helix 5
5
A
62 69Right-handed alpha
Helix 6
6
A
70 84Right-handed alpha
Helix 7
7
A
90 104Right-handed alpha
Helix 8
8
A
106 110Right-handed 310
Helix 9
9
A
111 121Right-handed alpha
Helix 10
10
A
123 135Right-handed alpha
Helix 11
11
A
148 157Right-handed alpha
Helix 12
12
A
171 177Right-handed alpha
Helix 13
13
A
177 188Right-handed alpha
Helix 14
14
A
197 216Right-handed alpha
Helix 15
15
A
234 243Right-handed alpha
Helix 16
16
A
243 251Right-handed alpha
Helix 17
17
A
266 273Right-handed 310
Helix 18
18
A
281 291Right-handed alpha
Helix 19
19
A
302 304Right-handed 310
Helix 20
20
A
305 316Right-handed alpha
Helix 21
21
A
325 329Right-handed 310
Helix 22
22
A
330 346Right-handed alpha
Helix 23
23
A
360 386Right-handed alpha
Helix 24
24
A
392 405Right-handed alpha
Helix 25
25
A
405 412Right-handed alpha
Helix 26
26
B
5 20Right-handed alpha
Helix 27
27
B
31 35Right-handed 310
Helix 28
28
B
41 47Right-handed alpha
Helix 29
29
B
48 57Right-handed alpha
Helix 30
30
B
62 69Right-handed alpha
Helix 31
31
B
70 84Right-handed alpha
Helix 32
32
B
90 104Right-handed alpha
Helix 33
33
B
106 110Right-handed 310
Helix 34
34
B
111 121Right-handed alpha
Helix 35
35
B
123 135Right-handed alpha
Helix 36
36
B
148 157Right-handed alpha
Helix 37
37
B
171 177Right-handed alpha
Helix 38
38
B
177 188Right-handed alpha
Helix 39
39
B
197 216Right-handed alpha
Helix 40
40
B
234 243Right-handed alpha
Helix 41
41
B
243 251Right-handed alpha
Helix 42
42
B
266 273Right-handed 310
Helix 43
43
B
281 291Right-handed alpha
Helix 44
44
B
302 304Right-handed 310
Helix 45
45
B
305 316Right-handed alpha
Helix 46
46
B
325 329Right-handed 310
Helix 47
47
B
330 346Right-handed alpha
Helix 48
48
B
360 386Right-handed alpha
Helix 49
49
B
392 405Right-handed alpha
Helix 50
50
B
405 412Right-handed alpha
Helix 51
51
C
5 20Right-handed alpha
Helix 52
52
C
31 35Right-handed 310
Helix 53
53
C
41 47Right-handed alpha
Helix 54
54
C
48 56Right-handed alpha
Helix 55
55
C
62 69Right-handed alpha
Helix 56
56
C
70 84Right-handed alpha
Helix 57
57
C
90 104Right-handed alpha
Helix 58
58
C
106 110Right-handed 310
Helix 59
59
C
111 121Right-handed alpha
Helix 60
60
C
123 135Right-handed alpha
Helix 61
61
C
148 157Right-handed alpha
Helix 62
62
C
171 177Right-handed alpha
Helix 63
63
C
177 188Right-handed alpha
Helix 64
64
C
197 216Right-handed alpha
Helix 65
65
C
234 243Right-handed alpha
Helix 66
66
C
243 251Right-handed alpha
Helix 67
67
C
266 273Right-handed 310
Helix 68
68
C
281 291Right-handed alpha
Helix 69
69
C
302 304Right-handed 310
Helix 70
70
C
305 316Right-handed alpha
Helix 71
71
C
325 329Right-handed 310
Helix 72
72
C
330 346Right-handed alpha
Helix 73
73
C
360 386Right-handed alpha
Helix 74
74
C
392 405Right-handed alpha
Helix 75
75
C
405 412Right-handed alpha
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There are 9 sheets in PDB entry 2Q6E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
137 141parallel
Strand 3
A
165 166parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
220 224parallel
Strand 3
A
255 259parallel
Strand 4
A
296 300parallel
Strand 5
A
319 321parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
275 276anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 24first strand
Strand 2
B
137 141parallel
Strand 3
B
165 166parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
220 224parallel
Strand 3
B
255 259parallel
Strand 4
B
296 300parallel
Strand 5
B
319 321parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 262first strand
Strand 2
B
275 276anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 24first strand
Strand 2
C
137 141parallel
Strand 3
C
165 166parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 170first strand
Strand 2
C
220 224parallel
Strand 3
C
255 259parallel
Strand 4
C
296 300parallel
Strand 5
C
319 321parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
261 262first strand
Strand 2
C
275 276anti-parallel
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