Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q83


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q83 entry

There are 2 chains in PDB entry 2Q83 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 22ILE 357
B
 LEU 22ILE 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2Q83. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 38Right-handed alpha
Helix 2
2
A
39 41Right-handed 310
Helix 3
3
A
77 95Right-handed alpha
Helix 4
4
A
133 152Right-handed alpha
Helix 5
5
A
168 190Right-handed alpha
Helix 6
6
A
193 220Right-handed alpha
Helix 7
7
A
221 232Right-handed alpha
Helix 8
8
A
249 251Right-handed 310
Helix 9
9
A
266 278Right-handed alpha
Helix 10
10
A
285 300Right-handed alpha
Helix 11
11
A
303 316Right-handed alpha
Helix 12
12
A
317 329Right-handed alpha
Helix 13
13
A
335 354Right-handed alpha
Helix 14
14
B
23 38Right-handed alpha
Helix 15
15
B
39 41Right-handed 310
Helix 16
16
B
77 95Right-handed alpha
Helix 17
17
B
133 152Right-handed alpha
Helix 18
18
B
168 183Right-handed alpha
Helix 19
19
B
183 190Right-handed alpha
Helix 20
20
B
193 220Right-handed alpha
Helix 21
21
B
221 232Right-handed alpha
Helix 22
22
B
241 243Right-handed 310
Helix 23
23
B
249 251Right-handed 310
Helix 24
24
B
266 278Right-handed alpha
Helix 25
25
B
285 300Right-handed alpha
Helix 26
26
B
303 316Right-handed alpha
Helix 27
27
B
317 329Right-handed alpha
Helix 28
28
B
335 354Right-handed alpha
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There are 6 sheets in PDB entry 2Q83. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
58 64anti-parallel
Strand 3
A
67 74anti-parallel
Strand 4
A
116 122anti-parallel
Strand 5
A
111 113anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 236first strand
Strand 2
A
262 263anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
253 255anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
58 63anti-parallel
Strand 3
B
69 74anti-parallel
Strand 4
B
116 122anti-parallel
Strand 5
B
111 113anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 236first strand
Strand 2
B
262 263anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 247first strand
Strand 2
B
253 255anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il