Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q89


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q89 entry

There is 1 chain in PDB entry 2Q89 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 0LYS 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2Q89. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 12Right-handed alpha
Helix 2
2
A
35 48Right-handed alpha
Helix 3
3
A
59 61Right-handed 310
Helix 4
4
A
62 69Right-handed alpha
Helix 5
5
A
82 87Right-handed alpha
Helix 6
6
A
114 120Right-handed alpha
Helix 7
7
A
132 142Right-handed alpha
Helix 8
8
A
144 146Right-handed 310
Helix 9
9
A
153 163Right-handed alpha
Helix 10
10
A
173 184Right-handed alpha
Helix 11
11
A
207 209Right-handed 310
Helix 12
12
A
210 228Right-handed alpha
Helix 13
13
A
228 235Right-handed alpha
Helix 14
14
A
236 238Right-handed 310
Helix 15
15
A
240 246Right-handed alpha
Helix 16
16
A
248 254Right-handed alpha
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There are 5 sheets in PDB entry 2Q89. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
13 18parallel
Strand 3
A
74 75parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
33 34anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
205 206anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
200 201anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 150first strand
Strand 2
A
126 128parallel
Strand 3
A
168 172parallel
Strand 4
A
100 105anti-parallel
Strand 5
A
188 191anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il