Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q8L entry

There is 1 chain in PDB entry 2Q8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2Q8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 15Right-handed alpha
Helix 2
2
A
25 36Right-handed alpha
Helix 3
3
A
41 49Right-handed alpha
Helix 4
5
A
59 65Right-handed alpha
Helix 5
6
A
66 74Right-handed alpha
Helix 6
7
A
77 95Right-handed alpha
Helix 7
8
A
96 98Right-handed 310
Helix 8
9
A
106 109Right-handed 310
Helix 9
10
A
112 129Right-handed alpha
Helix 10
11
A
142 155Right-handed alpha
Helix 11
12
A
170 172Right-handed 310
Helix 12
13
A
173 177Right-handed alpha
Helix 13
14
A
196 202Right-handed alpha
Helix 14
15
A
212 228Right-handed alpha
Helix 15
16
A
230 234Right-handed 310
Helix 16
17
A
245 256Right-handed alpha
Helix 17
18
A
272 281Right-handed alpha
Helix 18
19
A
284 286Right-handed 310
Helix 19
20
A
293 298Right-handed alpha
Helix 20
21
A
301 322Right-handed alpha
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There are 2 sheets in PDB entry 2Q8L. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
100 104parallel
Strand 3
A
133 139parallel
Strand 4
A
161 164parallel
Strand 5
A
187 191parallel
Strand 6
A
237 240parallel
Strand 7
A
261 263parallel
Strand 8
A
288 292parallel
Strand 9
A
18 22parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
184 185anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il