Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q8X entry

There are 2 chains in PDB entry 2Q8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2VAL 331
B
 SER 4VAL 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2Q8X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 12Right-handed alpha
Helix 2
2
A
23 30Right-handed alpha
Helix 3
3
A
30 38Right-handed alpha
Helix 4
4
A
48 53Right-handed alpha
Helix 5
5
A
61 74Right-handed alpha
Helix 6
6
A
90 95Right-handed 310
Helix 7
7
A
103 123Right-handed alpha
Helix 8
8
A
147 154Right-handed alpha
Helix 9
9
A
156 169Right-handed alpha
Helix 10
10
A
183 200Right-handed alpha
Helix 11
11
A
219 232Right-handed alpha
Helix 12
12
A
260 281Right-handed alpha
Helix 13
13
A
298 302Right-handed 310
Helix 14
14
A
322 329Right-handed alpha
Helix 15
15
B
7 12Right-handed alpha
Helix 16
16
B
23 30Right-handed alpha
Helix 17
17
B
30 38Right-handed alpha
Helix 18
18
B
48 53Right-handed alpha
Helix 19
19
B
61 74Right-handed alpha
Helix 20
20
B
90 95Right-handed 310
Helix 21
21
B
103 123Right-handed alpha
Helix 22
22
B
147 154Right-handed alpha
Helix 23
23
B
156 169Right-handed alpha
Helix 24
24
B
183 200Right-handed alpha
Helix 25
25
B
219 232Right-handed alpha
Helix 26
26
B
260 281Right-handed alpha
Helix 27
27
B
298 302Right-handed 310
Helix 28
28
B
322 330Right-handed alpha
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There are 2 sheets in PDB entry 2Q8X. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
236 245parallel
Strand 3
A
285 290parallel
Strand 4
A
17 22parallel
Strand 5
A
40 43parallel
Strand 6
A
77 85parallel
Strand 7
A
128 133parallel
Strand 8
A
173 178parallel
Strand 9
A
206 209parallel
Strand 10
A
236 245parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 213first strand
Strand 2
B
236 244parallel
Strand 3
B
285 290parallel
Strand 4
B
17 22parallel
Strand 5
B
40 43parallel
Strand 6
B
77 85parallel
Strand 7
B
128 133parallel
Strand 8
B
173 178parallel
Strand 9
B
206 209parallel
Strand 10
B
236 244parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il