Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q9C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q9C entry

There are 2 chains in PDB entry 2Q9C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 304
B
 MET 1ASP 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 2Q9C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 11Right-handed alpha
Helix 2
2
A
11 16Right-handed alpha
Helix 3
3
A
18 22Right-handed 310
Helix 4
4
A
27 42Right-handed alpha
Helix 5
5
A
45 58Right-handed alpha
Helix 6
6
A
63 77Right-handed alpha
Helix 7
7
A
79 88Right-handed alpha
Helix 8
8
A
114 128Right-handed alpha
Helix 9
9
A
148 157Right-handed alpha
Helix 10
10
A
168 183Right-handed alpha
Helix 11
11
A
201 217Right-handed alpha
Helix 12
12
A
234 248Right-handed alpha
Helix 13
13
A
256 260Right-handed 310
Helix 14
14
A
262 264Right-handed 310
Helix 15
15
A
265 274Right-handed alpha
Helix 16
16
A
285 287Right-handed 310
Helix 17
17
A
293 303Right-handed alpha
Helix 18
18
B
2 11Right-handed alpha
Helix 19
19
B
11 16Right-handed alpha
Helix 20
20
B
18 22Right-handed 310
Helix 21
21
B
27 42Right-handed alpha
Helix 22
22
B
45 58Right-handed alpha
Helix 23
23
B
63 76Right-handed alpha
Helix 24
24
B
114 129Right-handed alpha
Helix 25
25
B
146 157Right-handed alpha
Helix 26
26
B
168 184Right-handed alpha
Helix 27
27
B
201 217Right-handed alpha
Helix 28
28
B
233 248Right-handed alpha
Helix 29
29
B
262 264Right-handed 310
Helix 30
30
B
265 274Right-handed alpha
Helix 31
31
B
293 303Right-handed alpha
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There are 2 sheets in PDB entry 2Q9C. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
133 137parallel
Strand 3
A
187 191parallel
Strand 4
A
104 108parallel
Strand 5
A
223 229parallel
Strand 6
A
251 255parallel
Strand 7
A
277 281parallel
Strand 8
A
289 291anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
133 136parallel
Strand 3
B
187 190parallel
Strand 4
B
104 108parallel
Strand 5
B
223 229parallel
Strand 6
B
251 255parallel
Strand 7
B
277 281parallel
Strand 8
B
289 291anti-parallel
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