Analysis of interatomic Contacts of Structural Units in PDB entry:
2QA4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QA4 entry

There are 34 chains in PDB entry 2QA4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
0
U 10 U 2586
0
U 2589 G 2618
0
U 2620 U 2620
0
A 2622 A 2914
9
U 1 C 122
A
GLY 1GLY 237
B
PRO 1GLY 337
C
MET 1ARG 246
D
PHE 10VAL 174
E
PRO 1PRO 172
F
PRO 1ARG 119
G
ARG 7GLY 132
H
LYS 1ALA 171
I
ILE 5SER 130
J
ALA 4TRP 145
K
MET 1VAL 132
L
THR 1GLN 150
M
ALA 1ALA 194
N
ALA 1LEU 186
O
SER 1ARG 115
P
THR 1ALA 143
Q
PRO 1GLU 95
R
GLY 1PRO 150
S
SER 1ILE 81
T
SER 1ALA 119
U
ARG 4ARG 56
V
THR 1ASP 65
W
MET 1ARG 154
X
GLU 7GLU 88
Y
THR 95VAL 236
Z
ARG 10SER 82
1
THR 1GLU 56
2
GLY 1GLU 49
3
MET 1GLU 92
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are137 helices in PDB entry 2QA4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
4 12Right-handed alpha
Helix 2
2
A
19 23Right-handed 310
Helix 3
3
A
97 99Right-handed 310
Helix 4
4
A
171 181Right-handed alpha
Helix 5
5
B
10 14Right-handed 310
Helix 6
6
B
108 112Right-handed 310
Helix 7
7
B
122 135Right-handed alpha
Helix 8
8
B
147 151Right-handed 310
Helix 9
9
B
170 185Right-handed alpha
Helix 10
10
B
189 194Right-handed alpha
Helix 11
11
B
213 219Right-handed alpha
Helix 12
12
B
225 230Right-handed 310
Helix 13
13
C
19 24Right-handed 310
Helix 14
14
C
27 42Right-handed alpha
Helix 15
15
C
103 120Right-handed alpha
Helix 16
16
C
120 127Right-handed alpha
Helix 17
17
C
142 147Right-handed 310
Helix 18
18
C
149 161Right-handed alpha
Helix 19
19
C
163 170Right-handed alpha
Helix 20
20
C
177 183Right-handed 310
Helix 21
21
C
201 206Right-handed alpha
Helix 22
22
C
219 224Right-handed alpha
Helix 23
23
C
225 228Right-handed 310
Helix 24
24
C
237 244Right-handed alpha
Helix 25
25
C
245 246Right-handed 310
Helix 26
26
D
10 14Right-handed 310
Helix 27
27
D
37 42Right-handed alpha
Helix 28
28
D
77 88Right-handed alpha
Helix 29
29
D
89 91Right-handed 310
Helix 30
30
D
139 144Right-handed alpha
Helix 31
31
D
158 168Right-handed alpha
Helix 32
32
E
55 77Right-handed alpha
Helix 33
33
E
106 110Right-handed 310
Helix 34
34
E
137 151Right-handed alpha
Helix 35
35
F
9 27Right-handed alpha
Helix 36
36
F
32 43Right-handed alpha
Helix 37
37
F
57 62Right-handed alpha
Helix 38
38
F
62 69Right-handed alpha
Helix 39
39
F
80 87Right-handed alpha
Helix 40
40
F
104 119Right-handed alpha
Helix 41
41
G
13 29Right-handed alpha
Helix 42
42
G
42 50Right-handed alpha
Helix 43
43
G
63 73Right-handed alpha
Helix 44
44
G
78 84Right-handed alpha
Helix 45
45
G
99 108Right-handed alpha
Helix 46
46
H
2 6Right-handed 310
Helix 47
47
H
39 43Right-handed 310
Helix 48
48
H
59 78Right-handed alpha
Helix 49
49
H
142 154Right-handed alpha
Helix 50
50
H
155 157Right-handed 310
Helix 51
55
J
18 31Right-handed alpha
Helix 52
56
J
40 43Right-handed 310
Helix 53
57
J
49 63Right-handed alpha
Helix 54
58
J
74 85Right-handed alpha
Helix 55
59
J
91 100Right-handed alpha
Helix 56
60
J
132 140Right-handed alpha
Helix 57
61
K
115 121Right-handed alpha
Helix 58
62
K
121 126Right-handed alpha
Helix 59
63
L
2 7Right-handed alpha
Helix 60
64
L
54 58Right-handed 310
Helix 61
65
L
66 71Right-handed alpha
Helix 62
66
L
94 96Right-handed 310
Helix 63
67
L
126 135Right-handed alpha
Helix 64
68
M
4 12Right-handed alpha
Helix 65
69
M
17 32Right-handed alpha
Helix 66
70
M
45 53Right-handed alpha
Helix 67
71
M
82 86Right-handed 310
Helix 68
72
M
96 109Right-handed alpha
Helix 69
73
M
138 144Right-handed alpha
Helix 70
74
M
147 156Right-handed 310
Helix 71
75
M
158 162Right-handed 310
Helix 72
76
M
164 171Right-handed alpha
Helix 73
77
M
187 191Right-handed 310
Helix 74
78
N
10 15Right-handed alpha
Helix 75
79
N
19 27Right-handed alpha
Helix 76
80
N
28 30Right-handed 310
Helix 77
81
N
63 70Right-handed 310
Helix 78
82
N
77 96Right-handed alpha
Helix 79
83
N
113 126Right-handed alpha
Helix 80
84
N
132 136Right-handed 310
Helix 81
85
N
138 144Right-handed alpha
Helix 82
86
N
144 153Right-handed alpha
Helix 83
87
N
169 180Right-handed alpha
Helix 84
88
O
4 21Right-handed alpha
Helix 85
89
O
24 35Right-handed alpha
Helix 86
90
O
36 40Right-handed 310
Helix 87
91
O
44 52Right-handed alpha
Helix 88
92
O
82 93Right-handed alpha
Helix 89
93
O
98 105Right-handed alpha
Helix 90
94
P
3 14Right-handed alpha
Helix 91
95
P
27 33Right-handed alpha
Helix 92
96
P
36 46Right-handed alpha
Helix 93
97
P
59 71Right-handed alpha
Helix 94
98
P
76 80Right-handed 310
Helix 95
99
P
83 88Right-handed alpha
Helix 96
100
P
89 112Right-handed alpha
Helix 97
101
P
117 127Right-handed alpha
Helix 98
102
P
134 142Right-handed alpha
Helix 99
103
Q
87 89Right-handed 310
Helix 100
104
R
24 36Right-handed alpha
Helix 101
105
R
39 53Right-handed alpha
Helix 102
106
R
81 101Right-handed alpha
Helix 103
107
R
129 131Right-handed 310
Helix 104
108
S
11 22Right-handed alpha
Helix 105
109
S
33 46Right-handed alpha
Helix 106
110
S
73 80Right-handed alpha
Helix 107
111
T
3 13Right-handed alpha
Helix 108
112
T
16 22Right-handed 310
Helix 109
113
T
28 36Right-handed alpha
Helix 110
114
T
92 94Right-handed 310
Helix 111
115
T
105 114Right-handed alpha
Helix 112
116
U
33 41Right-handed alpha
Helix 113
117
V
4 11Right-handed alpha
Helix 114
118
V
12 35Right-handed alpha
Helix 115
119
V
43 64Right-handed alpha
Helix 116
120
W
14 24Right-handed alpha
Helix 117
121
W
38 49Right-handed alpha
Helix 118
122
W
58 69Right-handed alpha
Helix 119
123
W
80 88Right-handed alpha
Helix 120
124
W
92 102Right-handed alpha
Helix 121
125
W
142 153Right-handed alpha
Helix 122
126
X
21 23Right-handed 310
Helix 123
127
X
24 41Right-handed alpha
Helix 124
128
X
51 59Right-handed alpha
Helix 125
129
Y
110 124Right-handed alpha
Helix 126
130
Y
165 169Right-handed 310
Helix 127
131
Y
189 194Right-handed 310
Helix 128
132
Y
210 224Right-handed alpha
Helix 129
133
Z
10 15Right-handed 310
Helix 130
134
Z
19 30Right-handed alpha
Helix 131
135
Z
77 82Right-handed alpha
Helix 132
136
1
4 9Right-handed alpha
Helix 133
137
1
48 52Right-handed 310
Helix 134
138
2
6 17Right-handed alpha
Helix 135
139
2
22 30Right-handed alpha
Helix 136
140
3
35 44Right-handed alpha
Helix 137
141
3
49 54Right-handed 310
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There are 51 sheets in PDB entry 2QA4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
65 68first strand
Strand 2
A
54 60anti-parallel
Strand 3
A
39 47anti-parallel
Strand 4
A
79 81anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
93 95first strand
Strand 2
A
153 156anti-parallel
Strand 3
A
104 106anti-parallel
Strand 4
A
126 127anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
137 139first strand
Strand 2
A
145 147anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
214 215first strand
Strand 2
A
227 228parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
327 330first strand
Strand 2
B
41 54anti-parallel
Strand 3
B
308 313anti-parallel
Strand 4
B
199 205anti-parallel
Strand 5
B
261 271anti-parallel
Strand 6
B
294 298anti-parallel
Strand 7
B
66 75anti-parallel
Strand 8
B
41 54anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
93 101first strand
Strand 2
B
79 90anti-parallel
Strand 3
B
137 145anti-parallel
Strand 4
B
161 166anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
93 101first strand
Strand 2
B
79 90anti-parallel
Strand 3
B
187 188anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
210 212first strand
Strand 2
B
255 257anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
12 16first strand
Strand 2
C
3 6anti-parallel
Strand 3
C
138 140parallel
Strand 4
C
233 236parallel
Strand 5
C
193 196parallel
Strand 6
C
211 214parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
72 73first strand
Strand 2
C
76 77anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
173 174first strand
Strand 2
C
186 187anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
74 75first strand
Strand 2
D
18 22anti-parallel
Strand 3
D
131 134anti-parallel
Strand 4
D
104 105anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
25 26first strand
Strand 2
D
68 72anti-parallel
Strand 3
D
50 53anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
2 6first strand
Strand 2
E
46 51anti-parallel
Strand 3
E
38 43anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
12 16first strand
Strand 2
E
19 23anti-parallel
Strand 3
E
28 32anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
123 127first strand
Strand 2
E
130 135anti-parallel
Strand 3
E
80 84anti-parallel
Strand 4
E
168 170anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
94 98first strand
Strand 2
E
101 105anti-parallel
Strand 3
E
114 117anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
29 30first strand
Strand 2
F
95 98anti-parallel
Strand 3
F
48 51anti-parallel
Strand 4
F
74 77parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
37 38first strand
Strand 2
G
89 90anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
84 87first strand
Strand 2
H
132 138anti-parallel
Strand 3
H
45 51anti-parallel
Strand 4
H
161 165anti-parallel
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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
55 58first strand
Strand 2
H
122 127anti-parallel
Strand 3
H
93 95anti-parallel
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There are 1 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
8 9first strand
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
10 13first strand
Strand 2
J
36 39parallel
Strand 3
J
102 103parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
45 47first strand
Strand 2
J
129 131anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
12 13first strand
Strand 2
K
46 47anti-parallel
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There are 6 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
17 20first strand
Strand 2
K
26 34anti-parallel
Strand 3
K
52 60anti-parallel
Strand 4
K
68 75anti-parallel
Strand 5
K
94 98anti-parallel
Strand 6
K
17 20parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
80 81first strand
Strand 2
K
87 89anti-parallel
Strand 3
U
19 22parallel
Strand 4
U
28 31anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
113 114first strand
Strand 2
K
131 132parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
62 65first strand
Strand 2
L
106 109parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
90 92first strand
Strand 2
L
119 122parallel
Strand 3
L
139 142parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
37 40first strand
Strand 2
M
60 68anti-parallel
Strand 3
M
126 134anti-parallel
Strand 4
M
113 122anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
56 57first strand
Strand 2
N
43 49anti-parallel
Strand 3
N
33 38anti-parallel
Strand 4
N
101 103parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
41 43first strand
Strand 2
O
57 64parallel
Strand 3
O
75 81parallel
Strand 4
O
94 97parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
41 43first strand
Strand 2
O
57 64parallel
Strand 3
O
111 113parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
21 23first strand
Strand 2
P
49 51anti-parallel
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There are 5 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
80 86first strand
Strand 2
Q
70 77anti-parallel
Strand 3
Q
60 67anti-parallel
Strand 4
Q
38 41anti-parallel
Strand 5
Q
91 93anti-parallel
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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
13 21first strand
Strand 2
R
138 148anti-parallel
Strand 3
R
110 122anti-parallel
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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
57 58first strand
Strand 2
R
78 79anti-parallel
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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
125 127first strand
Strand 2
R
133 135anti-parallel
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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
5 8first strand
Strand 2
S
23 28anti-parallel
Strand 3
S
62 68anti-parallel
Strand 4
S
49 53anti-parallel
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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
24 26first strand
Strand 2
T
39 41anti-parallel
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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
71 74first strand
Strand 2
T
59 66anti-parallel
Strand 3
T
47 50anti-parallel
Strand 4
T
96 100anti-parallel
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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
78 80first strand
Strand 2
T
86 88anti-parallel
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There are 5 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
116 117first strand
Strand 2
W
31 35anti-parallel
Strand 3
W
2 6anti-parallel
Strand 4
W
52 54anti-parallel
Strand 5
W
139 140parallel
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There are 3 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
8 13first strand
Strand 2
X
69 77anti-parallel
Strand 3
X
82 86anti-parallel
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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Y
96 99first strand
Strand 2
Y
233 236anti-parallel
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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Y
183 187first strand
Strand 2
Y
201 205parallel
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There are 3 strands in AV sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
47 49first strand
Strand 2
Z
54 57anti-parallel
Strand 3
Z
63 65anti-parallel
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There are 2 strands in AW sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
1
16 18first strand
Strand 2
1
25 28anti-parallel
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There are 2 strands in AX sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
2 4first strand
Strand 2
3
89 91parallel
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There are 3 strands in AY sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
6 11first strand
Strand 2
3
16 24anti-parallel
Strand 3
3
67 71anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il