Analysis of interatomic Contacts of Structural Units in PDB entry:
2QAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QAE entry

There are 2 chains in PDB entry 2QAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1PHE 468
B
 ASN 1PHE 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 2QAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 24Right-handed alpha
Helix 2
2
A
38 45Right-handed alpha
Helix 3
3
A
45 65Right-handed alpha
Helix 4
4
A
66 69Right-handed 310
Helix 5
5
A
73 77Right-handed 310
Helix 6
6
A
80 107Right-handed alpha
Helix 7
7
A
163 169Right-handed alpha
Helix 8
8
A
183 196Right-handed alpha
Helix 9
9
A
214 229Right-handed alpha
Helix 10
10
A
282 287Right-handed alpha
Helix 11
11
A
313 316Right-handed 310
Helix 12
12
A
322 338Right-handed alpha
Helix 13
13
A
365 372Right-handed alpha
Helix 14
14
A
386 392Right-handed alpha
Helix 15
15
A
419 433Right-handed alpha
Helix 16
16
A
436 442Right-handed alpha
Helix 17
17
A
450 463Right-handed alpha
Helix 18
18
B
11 24Right-handed alpha
Helix 19
19
B
38 45Right-handed alpha
Helix 20
20
B
45 65Right-handed alpha
Helix 21
21
B
66 69Right-handed 310
Helix 22
22
B
73 77Right-handed 310
Helix 23
23
B
80 107Right-handed alpha
Helix 24
24
B
163 169Right-handed alpha
Helix 25
25
B
183 196Right-handed alpha
Helix 26
26
B
214 228Right-handed alpha
Helix 27
27
B
282 287Right-handed alpha
Helix 28
28
B
313 316Right-handed 310
Helix 29
29
B
322 338Right-handed alpha
Helix 30
30
B
365 372Right-handed alpha
Helix 31
31
B
386 392Right-handed alpha
Helix 32
32
B
419 433Right-handed alpha
Helix 33
33
B
436 442Right-handed alpha
Helix 34
34
B
450 463Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 2QAE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
132 142parallel
Strand 3
A
122 127anti-parallel
Strand 4
A
109 119anti-parallel
Strand 5
A
28 32parallel
Strand 6
A
3 8parallel
Strand 7
A
132 142parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
B
78 79anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
B
71 72anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
274 276anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
267 270parallel
Strand 3
A
176 180parallel
Strand 4
A
199 203parallel
Strand 5
A
232 234parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 244first strand
Strand 2
A
249 254anti-parallel
Strand 3
A
261 265anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 353first strand
Strand 2
A
358 363anti-parallel
Strand 3
A
410 417anti-parallel
Strand 4
A
398 404anti-parallel
Strand 5
A
376 382anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 311first strand
Strand 2
B
132 142parallel
Strand 3
B
122 127anti-parallel
Strand 4
B
109 119anti-parallel
Strand 5
B
28 32parallel
Strand 6
B
3 8parallel
Strand 7
B
132 142parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 148first strand
Strand 2
B
274 276anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 162first strand
Strand 2
B
267 270parallel
Strand 3
B
176 180parallel
Strand 4
B
199 203parallel
Strand 5
B
232 234parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 244first strand
Strand 2
B
249 254anti-parallel
Strand 3
B
261 265anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 353first strand
Strand 2
B
358 363anti-parallel
Strand 3
B
410 417anti-parallel
Strand 4
B
398 404anti-parallel
Strand 5
B
376 382anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il