Analysis of interatomic Contacts of Structural Units in PDB entry:
2QB7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QB7 entry

There are 2 chains in PDB entry 2QB7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5GLU 397
B
 LEU 4GLU 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 2QB7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 18Right-handed alpha
Helix 2
2
A
19 24Right-handed alpha
Helix 3
3
A
39 59Right-handed alpha
Helix 4
4
A
60 63Right-handed 310
Helix 5
5
A
78 84Right-handed 310
Helix 6
6
A
85 95Right-handed alpha
Helix 7
7
A
98 102Right-handed 310
Helix 8
8
A
104 115Right-handed alpha
Helix 9
9
A
132 136Right-handed 310
Helix 10
10
A
168 181Right-handed alpha
Helix 11
11
A
184 203Right-handed alpha
Helix 12
12
A
211 227Right-handed alpha
Helix 13
13
A
234 252Right-handed alpha
Helix 14
14
A
258 265Right-handed alpha
Helix 15
15
A
290 298Right-handed alpha
Helix 16
16
A
300 315Right-handed alpha
Helix 17
17
A
341 357Right-handed alpha
Helix 18
18
A
365 367Right-handed 310
Helix 19
19
A
380 394Right-handed alpha
Helix 20
20
B
7 18Right-handed alpha
Helix 21
21
B
19 24Right-handed alpha
Helix 22
22
B
39 58Right-handed alpha
Helix 23
23
B
78 84Right-handed 310
Helix 24
24
B
85 95Right-handed alpha
Helix 25
25
B
98 102Right-handed 310
Helix 26
26
B
104 115Right-handed alpha
Helix 27
27
B
132 136Right-handed 310
Helix 28
28
B
168 181Right-handed alpha
Helix 29
29
B
184 203Right-handed alpha
Helix 30
30
B
211 227Right-handed alpha
Helix 31
31
B
234 252Right-handed alpha
Helix 32
32
B
258 265Right-handed alpha
Helix 33
33
B
290 298Right-handed alpha
Helix 34
34
B
300 315Right-handed alpha
Helix 35
35
B
341 357Right-handed alpha
Helix 36
36
B
380 397Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2QB7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
28 33parallel
Strand 3
A
120 126parallel
Strand 4
A
141 147parallel
Strand 5
A
161 163parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 272first strand
Strand 2
A
280 287anti-parallel
Strand 3
A
319 328parallel
Strand 4
A
331 340anti-parallel
Strand 5
A
369 374anti-parallel
Strand 6
A
358 364anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 74first strand
Strand 2
B
28 33parallel
Strand 3
B
120 126parallel
Strand 4
B
141 147parallel
Strand 5
B
161 163parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 272first strand
Strand 2
B
280 287anti-parallel
Strand 3
B
319 328parallel
Strand 4
B
331 340anti-parallel
Strand 5
B
369 374anti-parallel
Strand 6
B
358 364anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il