Analysis of interatomic Contacts of Structural Units in PDB entry:
2QCJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QCJ entry

There are 2 chains in PDB entry 2QCJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 7PHE 290
B
 LEU 7PHE 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2QCJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 16Right-handed alpha
Helix 2
2
A
20 30Right-handed alpha
Helix 3
3
A
46 51Right-handed alpha
Helix 4
4
A
52 58Right-handed 310
Helix 5
5
A
109 120Right-handed alpha
Helix 6
6
A
202 213Right-handed alpha
Helix 7
7
A
232 248Right-handed alpha
Helix 8
8
A
257 266Right-handed alpha
Helix 9
9
A
275 289Right-handed alpha
Helix 10
10
B
10 15Right-handed alpha
Helix 11
11
B
20 30Right-handed alpha
Helix 12
12
B
46 51Right-handed alpha
Helix 13
13
B
52 58Right-handed 310
Helix 14
14
B
109 120Right-handed alpha
Helix 15
15
B
202 215Right-handed alpha
Helix 16
16
B
231 248Right-handed alpha
Helix 17
17
B
257 266Right-handed alpha
Helix 18
18
B
275 289Right-handed alpha
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There are 3 sheets in PDB entry 2QCJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
99 102anti-parallel
Strand 3
A
223 226parallel
Strand 4
A
124 127parallel
Strand 5
A
182 189parallel
Strand 6
A
169 177anti-parallel
Strand 7
A
157 166anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
136 137anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
84 90anti-parallel
Strand 3
B
99 102anti-parallel
Strand 4
B
223 226parallel
Strand 5
B
124 127parallel
Strand 6
B
184 189parallel
Strand 7
B
170 177anti-parallel
Strand 8
B
156 165anti-parallel
Strand 9
B
152 153anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il