Analysis of interatomic Contacts of Structural Units in PDB entry:
2QDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QDG entry

There are 4 chains in PDB entry 2QDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 366
B
 MET 1VAL 366
C
 MET 1ASP 358
D
 MET 1ASP 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 2QDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 15Right-handed 310
Helix 2
2
A
21 33Right-handed alpha
Helix 3
3
A
45 57Right-handed alpha
Helix 4
4
A
61 74Right-handed alpha
Helix 5
5
A
77 80Right-handed 310
Helix 6
6
A
88 93Right-handed alpha
Helix 7
7
A
101 109Right-handed alpha
Helix 8
8
A
139 151Right-handed alpha
Helix 9
9
A
169 190Right-handed alpha
Helix 10
10
A
207 229Right-handed alpha
Helix 11
11
A
232 236Right-handed 310
Helix 12
12
A
254 270Right-handed alpha
Helix 13
13
A
285 297Right-handed alpha
Helix 14
14
A
312 324Right-handed alpha
Helix 15
15
A
329 350Right-handed alpha
Helix 16
16
B
9 15Right-handed 310
Helix 17
17
B
21 33Right-handed alpha
Helix 18
18
B
45 54Right-handed alpha
Helix 19
19
B
61 74Right-handed alpha
Helix 20
20
B
88 94Right-handed alpha
Helix 21
21
B
101 109Right-handed alpha
Helix 22
22
B
139 150Right-handed alpha
Helix 23
23
B
169 190Right-handed alpha
Helix 24
24
B
207 229Right-handed alpha
Helix 25
25
B
232 236Right-handed 310
Helix 26
26
B
254 268Right-handed alpha
Helix 27
27
B
287 297Right-handed alpha
Helix 28
28
B
312 322Right-handed alpha
Helix 29
29
B
326 328Right-handed 310
Helix 30
30
B
329 349Right-handed alpha
Helix 31
31
B
353 357Right-handed 310
Helix 32
32
C
9 15Right-handed 310
Helix 33
33
C
21 33Right-handed alpha
Helix 34
34
C
45 54Right-handed alpha
Helix 35
35
C
55 57Right-handed 310
Helix 36
36
C
61 74Right-handed alpha
Helix 37
37
C
77 80Right-handed 310
Helix 38
38
C
88 93Right-handed alpha
Helix 39
39
C
101 109Right-handed alpha
Helix 40
40
C
139 151Right-handed alpha
Helix 41
41
C
169 190Right-handed alpha
Helix 42
42
C
207 229Right-handed alpha
Helix 43
43
C
232 236Right-handed 310
Helix 44
44
C
254 270Right-handed alpha
Helix 45
45
C
285 297Right-handed alpha
Helix 46
46
C
312 324Right-handed alpha
Helix 47
47
C
326 328Right-handed 310
Helix 48
48
C
329 350Right-handed alpha
Helix 49
49
C
353 358Right-handed 310
Helix 50
50
D
9 15Right-handed 310
Helix 51
51
D
21 33Right-handed alpha
Helix 52
52
D
45 54Right-handed alpha
Helix 53
53
D
55 57Right-handed 310
Helix 54
54
D
61 74Right-handed alpha
Helix 55
55
D
77 80Right-handed 310
Helix 56
56
D
88 93Right-handed alpha
Helix 57
57
D
101 109Right-handed alpha
Helix 58
58
D
139 149Right-handed alpha
Helix 59
59
D
169 189Right-handed alpha
Helix 60
60
D
207 229Right-handed alpha
Helix 61
61
D
232 235Right-handed 310
Helix 62
62
D
254 270Right-handed alpha
Helix 63
63
D
285 297Right-handed alpha
Helix 64
64
D
312 324Right-handed alpha
Helix 65
65
D
326 328Right-handed 310
Helix 66
66
D
329 349Right-handed alpha
Helix 67
67
D
353 358Right-handed 310
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There are 10 sheets in PDB entry 2QDG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
B
3 7anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
82 87parallel
Strand 3
A
112 116parallel
Strand 4
A
154 161parallel
Strand 5
A
193 200parallel
Strand 6
A
237 238parallel
Strand 7
A
276 279parallel
Strand 8
A
306 311parallel
Strand 9
A
38 42parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
132 134anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 42first strand
Strand 2
B
82 87parallel
Strand 3
B
112 116parallel
Strand 4
B
154 161parallel
Strand 5
B
193 200parallel
Strand 6
B
237 238parallel
Strand 7
B
276 279parallel
Strand 8
B
306 311parallel
Strand 9
B
38 42parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 123first strand
Strand 2
B
132 134anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
D
3 7anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 42first strand
Strand 2
C
82 87parallel
Strand 3
C
112 116parallel
Strand 4
C
154 161parallel
Strand 5
C
193 200parallel
Strand 6
C
237 238parallel
Strand 7
C
276 279parallel
Strand 8
C
306 311parallel
Strand 9
C
38 42parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 123first strand
Strand 2
C
132 134anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 41first strand
Strand 2
D
82 87parallel
Strand 3
D
112 116parallel
Strand 4
D
154 161parallel
Strand 5
D
193 200parallel
Strand 6
D
237 238parallel
Strand 7
D
276 279parallel
Strand 8
D
306 311parallel
Strand 9
D
38 41parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
121 123first strand
Strand 2
D
132 134anti-parallel
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