Analysis of interatomic Contacts of Structural Units in PDB entry:
2QDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QDJ entry

There is 1 chain in PDB entry 2QDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 52ARG 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2QDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 64Right-handed alpha
Helix 2
2
A
67 83Right-handed alpha
Helix 3
3
A
94 111Right-handed alpha
Helix 4
4
A
116 125Right-handed alpha
Helix 5
5
A
127 136Right-handed alpha
Helix 6
6
A
141 173Right-handed alpha
Helix 7
7
A
187 205Right-handed alpha
Helix 8
8
A
211 229Right-handed alpha
Helix 9
9
A
231 235Right-handed 310
Helix 10
10
A
240 244Right-handed 310
Helix 11
11
A
271 282Right-handed alpha
Helix 12
12
A
284 295Right-handed alpha
Helix 13
13
A
295 300Right-handed alpha
Helix 14
14
A
313 329Right-handed alpha
Helix 15
15
A
332 339Right-handed 310
Helix 16
16
A
340 344Right-handed 310
Helix 17
17
A
346 354Right-handed alpha
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There are no sheets in PDB entry 2QDJ
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il