Analysis of interatomic Contacts of Structural Units in PDB entry:
2QDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QDP entry

There is 1 chain in PDB entry 2QDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 44GLU 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2QDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 57Right-handed alpha
Helix 2
2
A
63 69Right-handed alpha
Helix 3
3
A
72 83Right-handed alpha
Helix 4
4
A
89 93Right-handed 310
Helix 5
5
A
97 102Right-handed 310
Helix 6
6
A
110 114Right-handed 310
Helix 7
7
A
136 140Right-handed 310
Helix 8
8
A
151 153Right-handed 310
Helix 9
9
A
154 165Right-handed alpha
Helix 10
10
A
242 255Right-handed alpha
Helix 11
11
A
275 294Right-handed alpha
Helix 12
12
A
298 309Right-handed alpha
Helix 13
13
A
315 332Right-handed alpha
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There are 2 sheets in PDB entry 2QDP. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
295 297anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 134first strand
Strand 2
A
144 148anti-parallel
Strand 3
A
266 270parallel
Strand 4
A
169 173parallel
Strand 5
A
222 231parallel
Strand 6
A
211 219anti-parallel
Strand 7
A
197 206anti-parallel
Strand 8
A
191 194anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il