Analysis of interatomic Contacts of Structural Units in PDB entry:
2QF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QF6 entry

There are 4 chains in PDB entry 2QF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 17GLU 223
B
 VAL 17GLU 223
C
 VAL 17GLU 223
D
 VAL 17GLU 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 2QF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 35Right-handed alpha
Helix 2
2
A
42 65Right-handed alpha
Helix 3
3
A
66 71Right-handed 310
Helix 4
4
A
99 107Right-handed alpha
Helix 5
5
A
111 124Right-handed alpha
Helix 6
6
A
127 135Right-handed 310
Helix 7
7
A
136 143Right-handed 310
Helix 8
8
A
192 198Right-handed 310
Helix 9
9
A
199 211Right-handed alpha
Helix 10
10
B
23 35Right-handed alpha
Helix 11
11
B
42 65Right-handed alpha
Helix 12
12
B
66 71Right-handed 310
Helix 13
13
B
99 107Right-handed alpha
Helix 14
14
B
112 124Right-handed alpha
Helix 15
15
B
127 135Right-handed 310
Helix 16
16
B
136 143Right-handed 310
Helix 17
17
B
192 198Right-handed 310
Helix 18
18
B
199 211Right-handed alpha
Helix 19
19
C
23 35Right-handed alpha
Helix 20
20
C
42 65Right-handed alpha
Helix 21
21
C
66 71Right-handed 310
Helix 22
22
C
99 107Right-handed alpha
Helix 23
23
C
112 124Right-handed alpha
Helix 24
24
C
127 135Right-handed 310
Helix 25
25
C
136 143Right-handed 310
Helix 26
26
C
192 198Right-handed 310
Helix 27
27
C
199 211Right-handed alpha
Helix 28
28
D
23 35Right-handed alpha
Helix 29
29
D
42 65Right-handed alpha
Helix 30
30
D
66 71Right-handed 310
Helix 31
31
D
99 107Right-handed alpha
Helix 32
32
D
112 124Right-handed alpha
Helix 33
33
D
127 135Right-handed 310
Helix 34
34
D
136 143Right-handed 310
Helix 35
35
D
192 198Right-handed 310
Helix 36
36
D
199 211Right-handed alpha
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There are 4 sheets in PDB entry 2QF6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
169 174anti-parallel
Strand 3
A
159 164anti-parallel
Strand 4
A
145 153anti-parallel
Strand 5
A
183 190anti-parallel
Strand 6
A
88 93anti-parallel
Strand 7
A
78 83anti-parallel
Strand 8
A
218 220parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 21first strand
Strand 2
B
169 174anti-parallel
Strand 3
B
159 164anti-parallel
Strand 4
B
145 153anti-parallel
Strand 5
B
183 190anti-parallel
Strand 6
B
88 93anti-parallel
Strand 7
B
78 83anti-parallel
Strand 8
B
218 220parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 21first strand
Strand 2
C
169 174anti-parallel
Strand 3
C
159 164anti-parallel
Strand 4
C
145 153anti-parallel
Strand 5
C
183 190anti-parallel
Strand 6
C
88 93anti-parallel
Strand 7
C
78 83anti-parallel
Strand 8
C
218 220parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 21first strand
Strand 2
D
169 174anti-parallel
Strand 3
D
159 164anti-parallel
Strand 4
D
145 153anti-parallel
Strand 5
D
183 190anti-parallel
Strand 6
D
88 93anti-parallel
Strand 7
D
78 83anti-parallel
Strand 8
D
218 220parallel
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