Analysis of interatomic Contacts of Structural Units in PDB entry:
2QGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QGM entry

There is 1 chain in PDB entry 2QGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 33LYS 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2QGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 49Right-handed alpha
Helix 2
2
A
61 63Right-handed 310
Helix 3
3
A
64 72Right-handed alpha
Helix 4
4
A
86 105Right-handed alpha
Helix 5
5
A
115 128Right-handed alpha
Helix 6
6
A
131 135Right-handed 310
Helix 7
7
A
142 158Right-handed alpha
Helix 8
8
A
176 191Right-handed alpha
Helix 9
9
A
194 203Right-handed alpha
Helix 10
10
A
204 208Right-handed 310
Helix 11
11
A
211 216Right-handed alpha
Helix 12
12
A
219 237Right-handed alpha
Helix 13
13
A
252 270Right-handed alpha
Helix 14
14
A
275 298Right-handed alpha
Helix 15
15
A
306 311Right-handed alpha
Helix 16
16
A
323 333Right-handed alpha
Helix 17
17
A
373 381Right-handed alpha
Helix 18
18
A
391 393Right-handed 310
Helix 19
19
A
394 403Right-handed alpha
Helix 20
20
A
426 430Right-handed alpha
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There are 3 sheets in PDB entry 2QGM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
385 389anti-parallel
Strand 3
A
432 439anti-parallel
Strand 4
A
336 350parallel
Strand 5
A
76 79parallel
Strand 6
A
301 304parallel
Strand 7
A
108 114parallel
Strand 8
A
166 171parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
385 389anti-parallel
Strand 3
A
432 439anti-parallel
Strand 4
A
336 350parallel
Strand 5
A
363 366anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 408first strand
Strand 2
A
421 425anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il