Analysis of interatomic Contacts of Structural Units in PDB entry:
2QGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QGV entry

There are 10 chains in PDB entry 2QGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5GLU 125
B
 THR 5GLU 125
C
 THR 5GLU 125
D
 THR 5GLU 125
E
 THR 5GLU 125
F
 THR 5GLU 125
G
 THR 5GLU 125
H
 THR 5GLU 125
I
 THR 5GLU 125
J
 THR 5GLU 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 2QGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 17Right-handed alpha
Helix 2
2
A
23 33Right-handed alpha
Helix 3
3
A
52 63Right-handed alpha
Helix 4
4
A
76 87Right-handed alpha
Helix 5
5
A
112 125Right-handed alpha
Helix 6
6
B
5 17Right-handed alpha
Helix 7
7
B
23 33Right-handed alpha
Helix 8
8
B
52 63Right-handed alpha
Helix 9
9
B
76 88Right-handed alpha
Helix 10
10
B
112 125Right-handed alpha
Helix 11
11
C
5 17Right-handed alpha
Helix 12
12
C
23 33Right-handed alpha
Helix 13
13
C
52 63Right-handed alpha
Helix 14
14
C
76 87Right-handed alpha
Helix 15
15
C
112 122Right-handed alpha
Helix 16
16
D
5 17Right-handed alpha
Helix 17
17
D
23 33Right-handed alpha
Helix 18
18
D
52 63Right-handed alpha
Helix 19
19
D
76 88Right-handed alpha
Helix 20
20
D
112 125Right-handed alpha
Helix 21
21
E
5 17Right-handed alpha
Helix 22
22
E
23 33Right-handed alpha
Helix 23
23
E
52 63Right-handed alpha
Helix 24
24
E
76 88Right-handed alpha
Helix 25
25
E
112 122Right-handed alpha
Helix 26
26
F
5 17Right-handed alpha
Helix 27
27
F
23 33Right-handed alpha
Helix 28
28
F
52 63Right-handed alpha
Helix 29
29
F
76 88Right-handed alpha
Helix 30
30
F
112 125Right-handed alpha
Helix 31
31
G
5 17Right-handed alpha
Helix 32
32
G
23 33Right-handed alpha
Helix 33
33
G
52 63Right-handed alpha
Helix 34
34
G
76 88Right-handed alpha
Helix 35
35
G
112 122Right-handed alpha
Helix 36
36
H
5 18Right-handed alpha
Helix 37
37
H
23 25Right-handed 310
Helix 38
38
H
26 34Right-handed alpha
Helix 39
39
H
53 63Right-handed alpha
Helix 40
40
H
76 88Right-handed alpha
Helix 41
41
H
112 124Right-handed alpha
Helix 42
42
I
5 16Right-handed alpha
Helix 43
43
I
23 25Right-handed 310
Helix 44
44
I
26 33Right-handed alpha
Helix 45
45
I
48 52Right-handed 310
Helix 46
46
I
53 64Right-handed alpha
Helix 47
47
I
76 87Right-handed alpha
Helix 48
48
I
112 122Right-handed alpha
Helix 49
49
J
5 16Right-handed alpha
Helix 50
50
J
23 32Right-handed alpha
Helix 51
51
J
48 52Right-handed 310
Helix 52
52
J
53 64Right-handed alpha
Helix 53
53
J
76 87Right-handed alpha
Helix 54
54
J
113 121Right-handed alpha
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There are 10 sheets in PDB entry 2QGV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
71 74parallel
Strand 3
A
37 41parallel
Strand 4
A
94 99anti-parallel
Strand 5
A
102 108anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
71 74parallel
Strand 3
B
37 41parallel
Strand 4
B
94 99anti-parallel
Strand 5
B
102 108anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 21first strand
Strand 2
C
71 75parallel
Strand 3
C
37 41parallel
Strand 4
C
94 99anti-parallel
Strand 5
C
102 108anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 21first strand
Strand 2
D
71 75parallel
Strand 3
D
37 41parallel
Strand 4
D
94 99anti-parallel
Strand 5
D
102 108anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 21first strand
Strand 2
E
71 75parallel
Strand 3
E
37 41parallel
Strand 4
E
94 99anti-parallel
Strand 5
E
102 108anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
20 21first strand
Strand 2
F
71 75parallel
Strand 3
F
37 41parallel
Strand 4
F
94 99anti-parallel
Strand 5
F
102 108anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
20 21first strand
Strand 2
G
71 75parallel
Strand 3
G
37 41parallel
Strand 4
G
94 99anti-parallel
Strand 5
G
102 108anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
20 21first strand
Strand 2
H
71 75parallel
Strand 3
H
37 41parallel
Strand 4
H
94 99anti-parallel
Strand 5
H
102 106anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
20 21first strand
Strand 2
I
71 74parallel
Strand 3
I
37 41parallel
Strand 4
I
94 99anti-parallel
Strand 5
I
102 108anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
20 21first strand
Strand 2
J
71 75parallel
Strand 3
J
37 41parallel
Strand 4
J
94 99anti-parallel
Strand 5
J
102 108anti-parallel
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