Analysis of interatomic Contacts of Structural Units in PDB entry:
2QGY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QGY entry

There are 2 chains in PDB entry 2QGY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3LYS 378
B
 GLN 4LYS 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 2QGY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 28Right-handed 310
Helix 2
2
A
57 73Right-handed alpha
Helix 3
3
A
79 92Right-handed alpha
Helix 4
4
A
96 119Right-handed alpha
Helix 5
5
A
121 127Right-handed alpha
Helix 6
6
A
147 161Right-handed alpha
Helix 7
7
A
174 190Right-handed alpha
Helix 8
8
A
204 216Right-handed alpha
Helix 9
9
A
217 219Right-handed 310
Helix 10
10
A
231 242Right-handed alpha
Helix 11
11
A
254 264Right-handed alpha
Helix 12
12
A
279 293Right-handed alpha
Helix 13
13
A
306 319Right-handed alpha
Helix 14
14
A
328 330Right-handed 310
Helix 15
15
A
331 337Right-handed alpha
Helix 16
16
A
363 370Right-handed alpha
Helix 17
17
B
57 73Right-handed alpha
Helix 18
18
B
79 92Right-handed alpha
Helix 19
19
B
96 119Right-handed alpha
Helix 20
20
B
121 127Right-handed alpha
Helix 21
21
B
147 161Right-handed alpha
Helix 22
22
B
174 190Right-handed alpha
Helix 23
23
B
204 216Right-handed alpha
Helix 24
24
B
217 219Right-handed 310
Helix 25
25
B
231 242Right-handed alpha
Helix 26
26
B
254 264Right-handed alpha
Helix 27
27
B
279 292Right-handed alpha
Helix 28
28
B
306 319Right-handed alpha
Helix 29
29
B
328 330Right-handed 310
Helix 30
30
B
331 339Right-handed alpha
Helix 31
31
B
363 370Right-handed alpha
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There are 6 sheets in PDB entry 2QGY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 51first strand
Strand 2
A
35 41anti-parallel
Strand 3
A
11 19anti-parallel
Strand 4
A
371 377anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
269 270parallel
Strand 3
A
246 248parallel
Strand 4
A
222 224parallel
Strand 5
A
195 198parallel
Strand 6
A
166 168parallel
Strand 7
A
133 139parallel
Strand 8
A
325 327parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
269 270parallel
Strand 3
A
246 248parallel
Strand 4
A
222 224parallel
Strand 5
A
195 198parallel
Strand 6
A
166 168parallel
Strand 7
A
133 139parallel
Strand 8
A
349 352anti-parallel
Strand 9
A
343 346anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 51first strand
Strand 2
B
35 41anti-parallel
Strand 3
B
11 19anti-parallel
Strand 4
B
371 377anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 297first strand
Strand 2
B
269 270parallel
Strand 3
B
246 248parallel
Strand 4
B
222 224parallel
Strand 5
B
195 198parallel
Strand 6
B
166 168parallel
Strand 7
B
133 139parallel
Strand 8
B
325 327parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 297first strand
Strand 2
B
269 270parallel
Strand 3
B
246 248parallel
Strand 4
B
222 224parallel
Strand 5
B
195 198parallel
Strand 6
B
166 168parallel
Strand 7
B
133 139parallel
Strand 8
B
349 352anti-parallel
Strand 9
B
343 346anti-parallel
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