Analysis of interatomic Contacts of Structural Units in PDB entry:
2QHP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QHP entry

There is 1 chain in PDB entry 2QHP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2LEU 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 2QHP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 36Right-handed alpha
Helix 2
2
A
49 62Right-handed alpha
Helix 3
3
A
96 100Right-handed 310
Helix 4
4
A
104 113Right-handed alpha
Helix 5
5
A
121 125Right-handed 310
Helix 6
6
A
126 140Right-handed alpha
Helix 7
7
A
160 171Right-handed alpha
Helix 8
8
A
178 188Right-handed alpha
Helix 9
9
A
194 206Right-handed alpha
Helix 10
10
A
216 218Right-handed 310
Helix 11
11
A
243 259Right-handed alpha
Helix 12
12
A
261 278Right-handed alpha
Helix 13
13
A
287 292Right-handed alpha
Helix 14
14
A
293 295Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 2QHP. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
39 47parallel
Strand 3
A
4 8parallel
Strand 4
A
114 119parallel
Strand 5
A
147 151parallel
Strand 6
A
173 177parallel
Strand 7
A
210 214parallel
Strand 8
A
220 224anti-parallel
Strand 9
A
227 231anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 23first strand
Strand 2
A
12 16anti-parallel
Strand 3
A
76 80parallel
Strand 4
A
90 92anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il