Analysis of interatomic Contacts of Structural Units in PDB entry:
2QJ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QJ1 entry

There is 1 chain in PDB entry 2QJ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 27GLN 805
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 2QJ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 57Right-handed alpha
Helix 2
2
A
75 79Right-handed alpha
Helix 3
3
A
80 83Right-handed 310
Helix 4
4
A
127 141Right-handed alpha
Helix 5
5
A
145 161Right-handed alpha
Helix 6
6
A
168 184Right-handed alpha
Helix 7
7
A
191 196Right-handed 310
Helix 8
8
A
198 210Right-handed alpha
Helix 9
9
A
228 232Right-handed 310
Helix 10
10
A
266 269Right-handed 310
Helix 11
11
A
270 290Right-handed alpha
Helix 12
12
A
299 310Right-handed alpha
Helix 13
13
A
311 313Right-handed 310
Helix 14
14
A
341 358Right-handed alpha
Helix 15
15
A
377 379Right-handed 310
Helix 16
16
A
380 391Right-handed alpha
Helix 17
17
A
425 439Right-handed alpha
Helix 18
18
A
450 460Right-handed alpha
Helix 19
19
A
460 466Right-handed alpha
Helix 20
20
A
488 507Right-handed alpha
Helix 21
21
A
514 519Right-handed alpha
Helix 22
22
A
519 525Right-handed alpha
Helix 23
23
A
536 547Right-handed alpha
Helix 24
24
A
589 599Right-handed alpha
Helix 25
25
A
613 630Right-handed alpha
Helix 26
26
A
631 633Right-handed 310
Helix 27
27
A
634 656Right-handed alpha
Helix 28
28
A
658 663Right-handed alpha
Helix 29
29
A
665 669Right-handed 310
Helix 30
30
A
672 677Right-handed 310
Helix 31
31
A
686 694Right-handed alpha
Helix 32
32
A
712 720Right-handed alpha
Helix 33
33
A
729 742Right-handed alpha
Helix 34
34
A
746 760Right-handed alpha
Helix 35
35
A
769 783Right-handed alpha
Helix 36
36
A
792 800Right-handed alpha
Helix 37
37
A
801 803Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 2QJ1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 74first strand
Strand 2
A
96 106anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
323 326anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 339first strand
Strand 2
A
315 320anti-parallel
Strand 3
A
469 472parallel
Strand 4
A
475 478anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 400first strand
Strand 2
A
403 408anti-parallel
Strand 3
A
411 417anti-parallel
Strand 4
A
528 534anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 443first strand
Strand 2
A
446 447anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 570first strand
Strand 2
A
573 578anti-parallel
Strand 3
A
583 588anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il