Analysis of interatomic Contacts of Structural Units in PDB entry:
2QJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QJC entry

There is 1 chain in PDB entry 2QJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 8GLY 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2QJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 41Right-handed alpha
Helix 2
2
A
62 74Right-handed alpha
Helix 3
3
A
80 92Right-handed alpha
Helix 4
4
A
107 115Right-handed alpha
Helix 5
5
A
116 125Right-handed alpha
Helix 6
6
A
133 135Right-handed 310
Helix 7
7
A
149 153Right-handed 310
Helix 8
8
A
154 161Right-handed alpha
Helix 9
9
A
191 194Right-handed 310
Helix 10
10
A
205 209Right-handed 310
Helix 11
11
A
224 228Right-handed 310
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There are 3 sheets in PDB entry 2QJC. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
129 132parallel
Strand 3
A
137 140anti-parallel
Strand 4
A
199 202parallel
Strand 5
A
218 220parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
49 52parallel
Strand 3
A
21 24parallel
Strand 4
A
230 236anti-parallel
Strand 5
A
240 245anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
163 166anti-parallel
Strand 3
A
188 189anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il