Analysis of interatomic Contacts of Structural Units in PDB entry:
2QJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QJF entry

There are 2 chains in PDB entry 2QJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 233GLU 622
B
 TYR 232GLU 622
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 2QJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
243 253Right-handed alpha
Helix 2
2
A
260 273Right-handed alpha
Helix 3
3
A
283 294Right-handed alpha
Helix 4
4
A
313 321Right-handed alpha
Helix 5
5
A
347 357Right-handed alpha
Helix 6
6
A
363 371Right-handed alpha
Helix 7
7
A
393 397Right-handed 310
Helix 8
8
A
399 410Right-handed alpha
Helix 9
9
A
425 443Right-handed alpha
Helix 10
10
A
464 478Right-handed alpha
Helix 11
11
A
482 484Right-handed 310
Helix 12
12
A
498 513Right-handed alpha
Helix 13
13
A
540 549Right-handed alpha
Helix 14
14
A
576 581Right-handed 310
Helix 15
15
A
587 596Right-handed alpha
Helix 16
16
A
607 622Right-handed alpha
Helix 17
17
B
240 242Right-handed 310
Helix 18
18
B
243 254Right-handed alpha
Helix 19
19
B
260 272Right-handed alpha
Helix 20
20
B
283 294Right-handed alpha
Helix 21
21
B
313 321Right-handed alpha
Helix 22
22
B
347 357Right-handed alpha
Helix 23
23
B
363 371Right-handed alpha
Helix 24
24
B
393 397Right-handed 310
Helix 25
25
B
399 410Right-handed alpha
Helix 26
26
B
425 443Right-handed alpha
Helix 27
27
B
464 478Right-handed alpha
Helix 28
28
B
482 484Right-handed 310
Helix 29
29
B
499 513Right-handed alpha
Helix 30
30
B
540 549Right-handed alpha
Helix 31
31
B
576 581Right-handed 310
Helix 32
32
B
587 597Right-handed alpha
Helix 33
33
B
607 621Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 2QJF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 258first strand
Strand 2
A
325 330parallel
Strand 3
A
333 345anti-parallel
Strand 4
A
375 383anti-parallel
Strand 5
A
280 281anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 258first strand
Strand 2
A
325 330parallel
Strand 3
A
333 345anti-parallel
Strand 4
A
375 383anti-parallel
Strand 5
A
310 312anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
302 303anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 488first strand
Strand 2
A
447 453parallel
Strand 3
A
414 420parallel
Strand 4
A
517 520parallel
Strand 5
A
556 559parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
571 574first strand
Strand 2
A
563 566anti-parallel
Strand 3
A
583 584anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 258first strand
Strand 2
B
325 330parallel
Strand 3
B
333 345anti-parallel
Strand 4
B
375 383anti-parallel
Strand 5
B
310 312anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 296first strand
Strand 2
B
302 303anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 488first strand
Strand 2
B
447 453parallel
Strand 3
B
414 420parallel
Strand 4
B
517 520parallel
Strand 5
B
556 559parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
571 574first strand
Strand 2
B
563 566anti-parallel
Strand 3
B
583 584anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il