Analysis of interatomic Contacts of Structural Units in PDB entry:
2QJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QJO entry

There are 3 chains in PDB entry 2QJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -1VAL 336
B
 LYS 4VAL 339
C
 LYS 4SER 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 2QJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 31Right-handed alpha
Helix 2
2
A
53 63Right-handed alpha
Helix 3
3
A
66 71Right-handed alpha
Helix 4
4
A
84 101Right-handed alpha
Helix 5
5
A
114 122Right-handed 310
Helix 6
6
A
138 149Right-handed alpha
Helix 7
7
A
150 154Right-handed 310
Helix 8
8
A
159 170Right-handed alpha
Helix 9
9
A
172 191Right-handed alpha
Helix 10
10
A
240 254Right-handed alpha
Helix 11
11
A
258 265Right-handed alpha
Helix 12
12
A
314 320Right-handed alpha
Helix 13
13
A
321 324Right-handed 310
Helix 14
14
A
327 336Right-handed alpha
Helix 15
15
B
18 32Right-handed alpha
Helix 16
16
B
53 63Right-handed alpha
Helix 17
17
B
66 71Right-handed alpha
Helix 18
18
B
84 101Right-handed alpha
Helix 19
19
B
114 122Right-handed 310
Helix 20
20
B
138 148Right-handed alpha
Helix 21
21
B
150 158Right-handed 310
Helix 22
22
B
159 170Right-handed alpha
Helix 23
23
B
172 191Right-handed alpha
Helix 24
24
B
240 254Right-handed alpha
Helix 25
25
B
258 264Right-handed alpha
Helix 26
26
B
314 320Right-handed alpha
Helix 27
27
B
321 324Right-handed 310
Helix 28
28
B
327 339Right-handed alpha
Helix 29
29
C
18 32Right-handed alpha
Helix 30
30
C
53 64Right-handed alpha
Helix 31
31
C
66 71Right-handed alpha
Helix 32
32
C
84 101Right-handed alpha
Helix 33
33
C
117 121Right-handed 310
Helix 34
34
C
138 149Right-handed alpha
Helix 35
35
C
150 154Right-handed 310
Helix 36
36
C
159 170Right-handed alpha
Helix 37
37
C
172 191Right-handed alpha
Helix 38
38
C
240 254Right-handed alpha
Helix 39
39
C
258 265Right-handed alpha
Helix 40
40
C
314 320Right-handed alpha
Helix 41
41
C
321 324Right-handed 310
Helix 42
42
C
327 336Right-handed alpha
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There are 9 sheets in PDB entry 2QJO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 79first strand
Strand 2
A
32 42parallel
Strand 3
A
5 12parallel
Strand 4
A
106 110parallel
Strand 5
A
127 130parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
213 218anti-parallel
Strand 3
A
201 210anti-parallel
Strand 4
A
283 291parallel
Strand 5
A
266 272anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
201 210anti-parallel
Strand 3
A
213 218anti-parallel
Strand 4
A
309 313anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 79first strand
Strand 2
B
34 42parallel
Strand 3
B
7 12parallel
Strand 4
B
106 110parallel
Strand 5
B
127 130parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 229first strand
Strand 2
B
213 218anti-parallel
Strand 3
B
200 210anti-parallel
Strand 4
B
282 291parallel
Strand 5
B
266 272anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 234first strand
Strand 2
B
200 210anti-parallel
Strand 3
B
213 218anti-parallel
Strand 4
B
309 313anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 79first strand
Strand 2
C
34 42parallel
Strand 3
C
7 12parallel
Strand 4
C
106 110parallel
Strand 5
C
127 130parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
228 229first strand
Strand 2
C
213 218anti-parallel
Strand 3
C
201 210anti-parallel
Strand 4
C
283 291parallel
Strand 5
C
266 272anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
232 234first strand
Strand 2
C
201 210anti-parallel
Strand 3
C
213 218anti-parallel
Strand 4
C
309 313anti-parallel
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