Analysis of interatomic Contacts of Structural Units in PDB entry:
2QJP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2QJP entry

There are 12 chains in PDB entry 2QJP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	ALA 430
B	ALA 1	LYS 256
C	GLY 9	GLY 187
D	GLY 3	ALA 430
E	ALA 1	LYS 256
F	GLY 9	GLY 187
G	GLY 3	ALA 430
H	ALA 1	LYS 256
I	GLY 9	GLY 187
J	GLY 3	ALA 430
K	ALA 1	LYS 256
L	GLY 9	GLY 187

There are145 helices in PDB entry 2QJP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	13	21	Right-handed alpha
Helix 2	2	A	24	34	Right-handed alpha
Helix 3	3	A	42	45	Right-handed 310
Helix 4	4	A	46	67	Right-handed alpha
Helix 5	5	A	75	86	Right-handed alpha
Helix 6	6	A	89	119	Right-handed alpha
Helix 7	7	A	125	149	Right-handed alpha
Helix 8	8	A	152	165	Right-handed alpha
Helix 9	9	A	166	169	Right-handed 310
Helix 10	10	A	172	182	Right-handed alpha
Helix 11	11	A	187	220	Right-handed alpha
Helix 12	12	A	233	240	Right-handed alpha
Helix 13	13	A	244	270	Right-handed alpha
Helix 14	14	A	276	281	Right-handed 310
Helix 15	15	A	295	297	Right-handed 310
Helix 16	16	A	298	308	Right-handed alpha
Helix 17	17	A	312	321	Right-handed alpha
Helix 18	18	A	327	350	Right-handed alpha
Helix 19	19	A	356	359	Right-handed 310
Helix 20	20	A	360	382	Right-handed alpha
Helix 21	21	A	388	406	Right-handed alpha
Helix 22	22	A	406	415	Right-handed alpha
Helix 23	23	A	423	430	Right-handed alpha
Helix 24	24	B	21	35	Right-handed alpha
Helix 25	25	B	36	39	Right-handed 310
Helix 26	26	B	46	51	Right-handed 310
Helix 27	27	B	59	68	Right-handed alpha
Helix 28	28	B	119	124	Right-handed alpha
Helix 29	29	B	126	137	Right-handed alpha
Helix 30	30	B	143	147	Right-handed 310
Helix 31	31	B	166	170	Right-handed 310
Helix 32	32	B	203	220	Right-handed alpha
Helix 33	33	B	222	254	Right-handed alpha
Helix 34	34	C	11	37	Right-handed alpha
Helix 35	35	C	78	87	Right-handed alpha
Helix 36	36	C	89	93	Right-handed 310
Helix 37	37	D	13	21	Right-handed alpha
Helix 38	38	D	24	34	Right-handed alpha
Helix 39	39	D	46	67	Right-handed alpha
Helix 40	40	D	75	86	Right-handed alpha
Helix 41	41	D	89	119	Right-handed alpha
Helix 42	42	D	125	149	Right-handed alpha
Helix 43	43	D	152	165	Right-handed alpha
Helix 44	44	D	166	169	Right-handed 310
Helix 45	45	D	172	182	Right-handed alpha
Helix 46	46	D	187	220	Right-handed alpha
Helix 47	47	D	233	240	Right-handed alpha
Helix 48	48	D	244	270	Right-handed alpha
Helix 49	49	D	276	281	Right-handed 310
Helix 50	50	D	295	297	Right-handed 310
Helix 51	51	D	298	308	Right-handed alpha
Helix 52	52	D	312	322	Right-handed alpha
Helix 53	53	D	327	350	Right-handed alpha
Helix 54	54	D	356	359	Right-handed 310
Helix 55	55	D	360	382	Right-handed alpha
Helix 56	56	D	388	406	Right-handed alpha
Helix 57	57	D	406	415	Right-handed alpha
Helix 58	58	D	423	430	Right-handed alpha
Helix 59	59	E	21	35	Right-handed alpha
Helix 60	60	E	36	39	Right-handed 310
Helix 61	61	E	46	51	Right-handed 310
Helix 62	62	E	59	69	Right-handed alpha
Helix 63	63	E	102	107	Right-handed alpha
Helix 64	64	E	119	124	Right-handed alpha
Helix 65	65	E	126	137	Right-handed alpha
Helix 66	66	E	143	147	Right-handed 310
Helix 67	67	E	166	170	Right-handed 310
Helix 68	68	E	203	220	Right-handed alpha
Helix 69	69	E	222	254	Right-handed alpha
Helix 70	70	F	11	37	Right-handed alpha
Helix 71	71	F	78	87	Right-handed alpha
Helix 72	72	F	110	115	Right-handed 310
Helix 73	73	G	13	21	Right-handed alpha
Helix 74	74	G	24	34	Right-handed alpha
Helix 75	75	G	42	45	Right-handed 310
Helix 76	76	G	46	67	Right-handed alpha
Helix 77	77	G	75	86	Right-handed alpha
Helix 78	78	G	89	119	Right-handed alpha
Helix 79	79	G	125	149	Right-handed alpha
Helix 80	80	G	152	165	Right-handed alpha
Helix 81	81	G	166	169	Right-handed 310
Helix 82	82	G	172	182	Right-handed alpha
Helix 83	83	G	187	220	Right-handed alpha
Helix 84	84	G	233	240	Right-handed alpha
Helix 85	85	G	244	270	Right-handed alpha
Helix 86	86	G	276	281	Right-handed 310
Helix 87	87	G	295	297	Right-handed 310
Helix 88	88	G	298	308	Right-handed alpha
Helix 89	89	G	312	322	Right-handed alpha
Helix 90	90	G	327	350	Right-handed alpha
Helix 91	91	G	356	359	Right-handed 310
Helix 92	92	G	360	382	Right-handed alpha
Helix 93	93	G	388	406	Right-handed alpha
Helix 94	94	G	406	415	Right-handed alpha
Helix 95	95	G	423	430	Right-handed alpha
Helix 96	96	H	21	35	Right-handed alpha
Helix 97	97	H	36	39	Right-handed 310
Helix 98	98	H	46	51	Right-handed 310
Helix 99	99	H	59	68	Right-handed alpha
Helix 100	100	H	102	106	Right-handed 310
Helix 101	101	H	119	124	Right-handed alpha
Helix 102	102	H	126	137	Right-handed alpha
Helix 103	103	H	143	147	Right-handed 310
Helix 104	104	H	166	170	Right-handed 310
Helix 105	105	H	203	220	Right-handed alpha
Helix 106	106	H	222	254	Right-handed alpha
Helix 107	107	I	11	37	Right-handed alpha
Helix 108	108	I	78	88	Right-handed alpha
Helix 109	109	I	89	93	Right-handed 310
Helix 110	110	J	13	21	Right-handed alpha
Helix 111	111	J	24	34	Right-handed alpha
Helix 112	112	J	42	45	Right-handed 310
Helix 113	113	J	46	67	Right-handed alpha
Helix 114	114	J	75	86	Right-handed alpha
Helix 115	115	J	89	119	Right-handed alpha
Helix 116	116	J	125	149	Right-handed alpha
Helix 117	117	J	152	165	Right-handed alpha
Helix 118	118	J	166	169	Right-handed 310
Helix 119	119	J	172	182	Right-handed alpha
Helix 120	120	J	187	220	Right-handed alpha
Helix 121	121	J	233	240	Right-handed alpha
Helix 122	122	J	244	270	Right-handed alpha
Helix 123	123	J	276	281	Right-handed 310
Helix 124	124	J	295	297	Right-handed 310
Helix 125	125	J	298	308	Right-handed alpha
Helix 126	126	J	312	321	Right-handed alpha
Helix 127	127	J	327	350	Right-handed alpha
Helix 128	128	J	356	359	Right-handed 310
Helix 129	129	J	360	382	Right-handed alpha
Helix 130	130	J	388	406	Right-handed alpha
Helix 131	131	J	406	415	Right-handed alpha
Helix 132	132	J	423	430	Right-handed alpha
Helix 133	133	K	21	35	Right-handed alpha
Helix 134	134	K	36	39	Right-handed 310
Helix 135	135	K	46	51	Right-handed 310
Helix 136	136	K	59	68	Right-handed alpha
Helix 137	137	K	119	124	Right-handed alpha
Helix 138	138	K	126	137	Right-handed alpha
Helix 139	139	K	143	147	Right-handed 310
Helix 140	140	K	166	170	Right-handed 310
Helix 141	141	K	203	220	Right-handed alpha
Helix 142	142	K	222	254	Right-handed alpha
Helix 143	143	L	11	37	Right-handed alpha
Helix 144	144	L	78	87	Right-handed alpha
Helix 145	145	L	110	115	Right-handed 310

There are 21 sheets in PDB entry 2QJP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	241	243	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	181	183	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	53	first strand
Strand 2	C	183	185	anti-parallel
Strand 3	C	177	180	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	67	first strand
Strand 2	C	70	76	anti-parallel
Strand 3	C	122	126	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	141	first strand
Strand 2	C	146	149	anti-parallel
Strand 3	C	154	156	anti-parallel
Strand 4	C	162	164	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	241	243	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	73	first strand
Strand 2	E	80	82	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	157	first strand
Strand 2	E	181	183	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	53	first strand
Strand 2	F	183	185	anti-parallel
Strand 3	F	177	180	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	67	first strand
Strand 2	F	70	76	anti-parallel
Strand 3	F	122	126	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	141	first strand
Strand 2	F	146	149	anti-parallel
Strand 3	F	154	156	anti-parallel
Strand 4	F	162	164	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	38	first strand
Strand 2	G	241	243	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	157	first strand
Strand 2	H	181	183	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	51	53	first strand
Strand 2	I	183	185	anti-parallel
Strand 3	I	177	180	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	61	67	first strand
Strand 2	I	70	76	anti-parallel
Strand 3	I	122	126	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	137	141	first strand
Strand 2	I	146	149	anti-parallel
Strand 3	I	154	156	anti-parallel
Strand 4	I	162	164	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	36	38	first strand
Strand 2	J	241	243	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	155	157	first strand
Strand 2	K	181	183	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	51	53	first strand
Strand 2	L	183	185	anti-parallel
Strand 3	L	177	180	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	61	67	first strand
Strand 2	L	70	76	anti-parallel
Strand 3	L	122	126	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	137	141	first strand
Strand 2	L	146	149	anti-parallel
Strand 3	L	154	156	anti-parallel
Strand 4	L	162	164	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2QJP

Analysis of interatomic Contacts of Structural Units in PDB entry:
2QJP