Analysis of interatomic Contacts of Structural Units in PDB entry:
2QJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QJS entry

There are 4 chains in PDB entry 2QJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 24GLY 311
B
 PRO 24GLY 311
C
 PRO 24GLY 311
D
 PRO 24GLY 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 2QJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
87 90Right-handed 310
Helix 2
2
A
91 102Right-handed alpha
Helix 3
3
A
105 107Right-handed 310
Helix 4
4
A
118 123Right-handed alpha
Helix 5
5
A
124 132Right-handed alpha
Helix 6
6
A
139 148Right-handed alpha
Helix 7
7
A
238 252Right-handed alpha
Helix 8
8
A
263 267Right-handed 310
Helix 9
9
A
270 274Right-handed 310
Helix 10
10
A
289 310Right-handed alpha
Helix 11
11
B
87 90Right-handed 310
Helix 12
12
B
91 101Right-handed alpha
Helix 13
13
B
105 107Right-handed 310
Helix 14
14
B
118 123Right-handed alpha
Helix 15
15
B
124 132Right-handed alpha
Helix 16
16
B
139 148Right-handed alpha
Helix 17
17
B
238 252Right-handed alpha
Helix 18
18
B
263 268Right-handed 310
Helix 19
19
B
289 310Right-handed alpha
Helix 20
20
C
87 90Right-handed 310
Helix 21
21
C
91 101Right-handed alpha
Helix 22
22
C
105 107Right-handed 310
Helix 23
23
C
118 123Right-handed alpha
Helix 24
24
C
124 132Right-handed alpha
Helix 25
25
C
140 148Right-handed alpha
Helix 26
26
C
238 252Right-handed alpha
Helix 27
27
C
263 268Right-handed alpha
Helix 28
28
C
273 277Right-handed 310
Helix 29
29
C
289 307Right-handed alpha
Helix 30
30
D
91 103Right-handed alpha
Helix 31
31
D
105 107Right-handed 310
Helix 32
32
D
118 123Right-handed alpha
Helix 33
33
D
124 132Right-handed alpha
Helix 34
34
D
139 148Right-handed alpha
Helix 35
35
D
238 252Right-handed alpha
Helix 36
36
D
263 268Right-handed 310
Helix 37
37
D
270 277Right-handed 310
Helix 38
38
D
289 309Right-handed alpha
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There are 8 sheets in PDB entry 2QJS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 49first strand
Strand 2
A
52 54anti-parallel
Strand 3
A
71 75anti-parallel
Strand 4
A
79 83anti-parallel
Strand 5
A
109 113parallel
Strand 6
A
135 138parallel
Strand 7
A
172 173parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 182first strand
Strand 2
A
185 191anti-parallel
Strand 3
A
201 206anti-parallel
Strand 4
A
215 218anti-parallel
Strand 5
A
258 260parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 47first strand
Strand 2
B
52 54anti-parallel
Strand 3
B
71 74anti-parallel
Strand 4
B
80 83anti-parallel
Strand 5
B
109 113parallel
Strand 6
B
135 138parallel
Strand 7
B
172 173parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 182first strand
Strand 2
B
185 191anti-parallel
Strand 3
B
201 209anti-parallel
Strand 4
B
212 218anti-parallel
Strand 5
B
258 260parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 54first strand
Strand 2
C
71 75anti-parallel
Strand 3
C
79 83anti-parallel
Strand 4
C
109 113parallel
Strand 5
C
135 139parallel
Strand 6
C
172 174parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 181first strand
Strand 2
C
186 191anti-parallel
Strand 3
C
201 209anti-parallel
Strand 4
C
212 218anti-parallel
Strand 5
C
258 260parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 47first strand
Strand 2
D
52 54anti-parallel
Strand 3
D
71 75anti-parallel
Strand 4
D
79 83anti-parallel
Strand 5
D
109 113parallel
Strand 6
D
135 138parallel
Strand 7
D
172 173parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
179 182first strand
Strand 2
D
185 191anti-parallel
Strand 3
D
201 209anti-parallel
Strand 4
D
212 219anti-parallel
Strand 5
D
258 260parallel
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