Analysis of interatomic Contacts of Structural Units in PDB entry:
2QJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QJT entry

There are 2 chains in PDB entry 2QJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1GLY 344
A
 MET 1GLY 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 2QJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
15 28Right-handed alpha
Helix 2
2
B
50 65Right-handed alpha
Helix 3
3
B
68 70Right-handed 310
Helix 4
4
B
83 96Right-handed alpha
Helix 5
5
B
114 122Right-handed alpha
Helix 6
6
B
137 147Right-handed alpha
Helix 7
7
B
151 155Right-handed 310
Helix 8
8
B
162 172Right-handed alpha
Helix 9
9
B
174 195Right-handed alpha
Helix 10
10
B
242 256Right-handed alpha
Helix 11
11
B
260 267Right-handed alpha
Helix 12
12
B
318 324Right-handed alpha
Helix 13
13
B
331 343Right-handed alpha
Helix 14
14
A
15 27Right-handed alpha
Helix 15
15
A
50 63Right-handed alpha
Helix 16
16
A
68 70Right-handed 310
Helix 17
17
A
83 97Right-handed alpha
Helix 18
18
A
114 122Right-handed alpha
Helix 19
19
A
137 146Right-handed alpha
Helix 20
20
A
163 172Right-handed alpha
Helix 21
21
A
174 193Right-handed alpha
Helix 22
22
A
242 256Right-handed alpha
Helix 23
23
A
260 267Right-handed alpha
Helix 24
24
A
318 323Right-handed alpha
Helix 25
25
A
331 343Right-handed alpha
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There are 6 sheets in PDB entry 2QJT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 78first strand
Strand 2
B
29 39parallel
Strand 3
B
2 9parallel
Strand 4
B
105 107parallel
Strand 5
B
126 127parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 231first strand
Strand 2
B
215 221anti-parallel
Strand 3
B
202 212anti-parallel
Strand 4
B
284 294parallel
Strand 5
B
268 274anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 236first strand
Strand 2
B
202 212anti-parallel
Strand 3
B
215 221anti-parallel
Strand 4
B
309 316anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 78first strand
Strand 2
A
29 39parallel
Strand 3
A
2 9parallel
Strand 4
A
105 109parallel
Strand 5
A
126 129parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
215 221anti-parallel
Strand 3
A
202 212anti-parallel
Strand 4
A
284 294parallel
Strand 5
A
268 274anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 236first strand
Strand 2
A
202 212anti-parallel
Strand 3
A
215 221anti-parallel
Strand 4
A
309 316anti-parallel
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